PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.104100.1

Common Name

Csa_6G499130, LOC101204784

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ZF-HD

Protein Properties

Length: 249aa MW: 27100.2 Da PI: 7.2028

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.104100.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	100.1	1.5e-31	50	105	3	59
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 k +Y+eClkNhA+ +Ggha+DGCgEf+++ g+egt +alkCaAC+CHRnFHR+e+++ Cucsa.104100.1 50 KPKYRECLKNHAVGIGGHALDGCGEFLAA-GAEGTLDALKCAACNCHRNFHRKETDN 105 679***********************9.999*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01566	1.9E-28	52	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.2E-28	52	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	2.0E-22	52	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.049	53	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3D	G3DSA:1.10.10.60	1.8E-31	172	247	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.56E-19	172	246	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	2.8E-24	185	241	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MDFEDQDEHE EEEMDIAAAS YDDSLPNSGT RLKIPTTTDQ IMSSSPGQRK PKYRECLKNH 60 AVGIGGHALD GCGEFLAAGA EGTLDALKCA ACNCHRNFHR KETDNNLNPA VGVGLGIGEP 120 FLLPHPGQFS PYYRTPAGYL HVAPHHRPLA LPSTSGGGGT HSREEQEDMS NPSGGGGGGS 180 SSFGKKRFRT KFTQEQKDRM LGLAETLGWR IQKHDEAVVQ QFCNDTGVKR HVLKVWMHNN 240 KHTLGKKP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-25	186	243	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143449.1	0.0	PREDICTED: zinc-finger homeodomain protein 1-like
Swissprot	A2Z259	6e-81	ZHD1_ORYSI; Zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	6e-81	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A0A0KGP3	0.0	A0A0A0KGP3_CUCSA; Zinc finger homeodomain protein 1
STRING	XP_004160918.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF206	34	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	6e-66	homeobox protein 22

Link Out ? help Back to Top
Phytozome	Cucsa.104100.1
Entrez Gene	101204784

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]