PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.104900.2

Common Name

Csa_6G501930, LOC101216171

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

BES1

Protein Properties

Length: 256aa MW: 27340.6 Da PI: 6.4983

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.104900.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	43	1.7e-13	11	84	71	149
DUF822 71 kgskpleeaeaagssasaspesslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvsss 149 +g+kp+ + +g+sa++s +sslq s++ss ++spv+sy+asp+sssfpsp+++d ++++ llp+l++ s+++++ Cucsa.104900.2 11 QGCKPP--PIDIGTSANMSACSSLQPSPQSSCFPSPVPSYHASPSSSSFPSPTRFDGNPSS---YLLPFLQNISSIPAN 84 789999..7789********************************************985...9****99988776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	5.5E-10	11	65	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009741	Biological Process	response to brassinosteroid
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MFLIYCCYLV QGCKPPPIDI GTSANMSACS SLQPSPQSSC FPSPVPSYHA SPSSSSFPSP 60 TRFDGNPSSY LLPFLQNISS IPANLPPLRI SNSAPVTPPL SSPTSRGSKR KPDWESIPNS 120 YVTSFRHPLF AVSAPSSPTR CHHLTPATIP ECDESDASTV DSGRWVSFQT VAPSVAPPSP 180 TFNLMKPVSQ QNSLQDAVDR HGAMGWGATS DRGRGSEFEF EKFESGTVKP WEGERIHEVG 240 VDDLELTLGG GKARG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681875	0.0	LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143497.1	1e-176	PREDICTED: BES1/BZR1 homolog protein 2
Swissprot	Q94A43	3e-81	BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBL	A0A0A0KJ10	1e-175	A0A0A0KJ10_CUCSA; Uncharacterized protein
STRING	XP_004143497.1	1e-176	(Cucumis sativus)
STRING	XP_004160145.1	1e-176	(Cucumis sativus)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75080.2	9e-57	BES1 family protein

Link Out ? help Back to Top
Phytozome	Cucsa.104900.2
Entrez Gene	101216171

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]