PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.105790.1
Common NameCsa_7G432130
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 144aa    MW: 16032.8 Da    PI: 11.3311
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.105790.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2667.4e-2164112355
             AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g
  Cucsa.105790.1  64 YRGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRG 112
                     9*******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.4E-1563112IPR001471AP2/ERF domain
SMARTSM003806.3E-3363126IPR001471AP2/ERF domain
PROSITE profilePS5103222.86663120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-3063120IPR001471AP2/ERF domain
PRINTSPR003674.2E-116475IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-2264121IPR016177DNA-binding domain
CDDcd000187.24E-1564120No hitNo description
PRINTSPR003674.2E-1186102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MINTHPIPPL YNTFFPHSPP PDSQLDGIAA VVGRQVLFGD NRPTPTKSSS STSATAPTTG  60
QRSYRGVRKR PWGRWSAEIR DRIGRCRHWL GTFDTAEEAA RAYDAAARRL RGSKARTNFE  120
MPLVVPMEST SAWSTSSVEV KRNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-17631191471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818041e-160LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132551e-160LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023514530.11e-54ethylene-responsive transcription factor ERF084
SwissprotQ9M8M56e-27ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A0A0KA161e-101A0A0A0KA16_CUCSA; Uncharacterized protein
STRINGXP_004158825.11e-102(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130232631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.11e-27ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]