PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.106090.1
Common NameCsa_7G431330, LOC101206499
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family AP2
Protein Properties Length: 375aa    MW: 41850 Da    PI: 6.6455
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.106090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.89.6e-1268124155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ ++ Aa a++ a++k++g
  Cucsa.106090.1  68 SVYRGVTRHRWTGRFEAHLWDkNCWNEgQNKKGRQGAYDDEDAAAHAYDLAALKYWG 124
                     78*******************99997778888888*****99*************98 PP
2AP251.62.4e-16167218155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a+++a+ +++g
  Cucsa.106090.1 167 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDKAAIEYRG 218
                     89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.01E-1468133IPR016177DNA-binding domain
PfamPF008475.4E-868124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.9E-1269133IPR001471AP2/ERF domain
SMARTSM003801.3E-1869138IPR001471AP2/ERF domain
PROSITE profilePS5103218.30769132IPR001471AP2/ERF domain
PRINTSPR003673.5E-67081IPR001471AP2/ERF domain
CDDcd000184.27E-24167228No hitNo description
SuperFamilySSF541711.44E-17167228IPR016177DNA-binding domain
PfamPF008477.8E-12167218IPR001471AP2/ERF domain
PROSITE profilePS5103218.149168226IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-18168227IPR001471AP2/ERF domain
SMARTSM003805.9E-25168232IPR001471AP2/ERF domain
PRINTSPR003673.5E-6208228IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
LSSPPSLLLL MAKISNPSHN NSISTTTDHD PHSSSSSSSS SILHSQRKVL TKRTRKSTPR  60
DSPAQRSSVY RGVTRHRWTG RFEAHLWDKN CWNEGQNKKG RQGAYDDEDA AAHAYDLAAL  120
KYWGTETVLN FPLLTYQDEL KEMEGQSREE YIGYLRRKSS GFSRGVSKYR GVARHHHNGR  180
WEARIGRVFG NKYLYLGTYA TQEEAATAYD KAAIEYRGLN AVTNFDLSRY IKCLRPGEQD  240
IPNTNRPPNP NAGETPSEFD PNSLLGFTFP SQCSSSGQPS IEPLPEVGDG DCSSSSTAIQ  300
LLLHSSKFKD IIERTSTAET PSESDRPRRC FPDDIQTYFD CTQDSGDFAE GDDSIFGYLN  360
SFLPSSVFHC ELDA*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818040.0LN681804.1 Cucumis melo genomic scaffold, anchoredscaffold00060.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659487.10.0PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-108AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0A0K6670.0A0A0A0K667_CUCSA; Uncharacterized protein
STRINGXP_004163518.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130034101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.15e-97ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  4. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  5. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]