PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.106490.1

Common Name

Csa_4G046650, LOC101217763

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

GATA

Protein Properties

Length: 256aa MW: 27057.6 Da PI: 9.1212

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.106490.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	63.5	2.4e-20	131	165	1	35
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC tt+TplWR+gp+g+k+LCnaCG++++k+++ Cucsa.106490.1 131 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 165 ********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50114	13.89	125	161	IPR000679	Zinc finger, GATA-type
SMART	SM00401	4.0E-20	125	177	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	8.08E-14	128	175	No hit	No description
Gene3D	G3DSA:3.30.50.10	3.9E-17	129	165	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	6.34E-14	130	162	No hit	No description
PROSITE pattern	PS00344	0	131	156	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	5.9E-18	131	165	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0009909	Biological Process	regulation of flower development
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MMHHYGGGGG GSASSFSVFL SVPNHGAADM YSSSTNYASS SSSPSSVDCT LSLGTPSTRS 60 SEFDGDKRAA AAAARNHHRR SAGSYVSNFC WDLLHPKHKT SGRGGGGGGA SNNNINAAVS 120 NGGDPLLARR CANCDTTSTP LWRNGPRGPK SLCNACGIRF KKEERRAAAA TVNSSVAESN 180 HHHHHHHHPM FNGSYTNSNT WVPQQLPATT QKHPCLSAAI GNEDVGPENG ISFLSWRLNV 240 ANTDHRPTLV HDFTR*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681873	1e-134	LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBank	LN713261	1e-134	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146553.2	0.0	PREDICTED: GATA transcription factor 18-like
TrEMBL	A0A0A0KY15	0.0	A0A0A0KY15_CUCSA; Uncharacterized protein
STRING	XP_004146553.1	1e-166	(Cucumis sativus)
STRING	XP_004171538.1	1e-166	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4105	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50870.1	7e-36	GATA family protein

Link Out ? help Back to Top
Phytozome	Cucsa.106490.1
Entrez Gene	101217763

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]