PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.106510.1

Common Name

Csa_4G046670, LOC101218004

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

ZF-HD

Protein Properties

Length: 243aa MW: 26863.1 Da PI: 8.8794

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.106510.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	99.9	1.9e-31	52	106	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +rY +ClkNhA+++Ggh++DGCgEfmps ge+gt++++kCaAC+CHR+FHRr ee Cucsa.106510.1 52 LRYSQCLKNHAVKTGGHVLDGCGEFMPS-GEDGTPDSFKCAACECHRSFHRRVLEE 106 69***********************9.999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	3.0E-17	52	105	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	5.7E-28	53	102	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.2E-28	53	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	25.433	54	103	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	4.1E-15	163	232	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.4E-26	164	232	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	5.6E-27	175	232	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MEFKNQQTTS SSHHHLPFQY SLRPRTDPPP PPPPPPPLNL DPAPASPTST PLRYSQCLKN 60 HAVKTGGHVL DGCGEFMPSG EDGTPDSFKC AACECHRSFH RRVLEEEDIT NNTRLHILTS 120 APPQYNTQFS NGNNNNKQYP GRTRVAPMMM TFGGSTEAPA ESSSDGGAEA SGKQKKRCRT 180 KFSGEQKGKM MELANKIGWK IQKADEEEVL KFCNEIGVKR QNFKVWMHNN KQLPPTNNNS 240 SG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh5_A	1e-18	175	237	17	79	ZF-HD homeobox family protein
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681873	1e-137	LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBank	LN713261	1e-137	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146554.2	0.0	PREDICTED: zinc-finger homeodomain protein 6-like
TrEMBL	A0A0A0KWP2	1e-180	A0A0A0KWP2_CUCSA; Uncharacterized protein
STRING	XP_004168867.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24706	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18350.1	2e-49	homeobox protein 24

Link Out ? help Back to Top
Phytozome	Cucsa.106510.1
Entrez Gene	101218004

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]