PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.106670.2
Common NameCsa_4G047370, LOC101208899
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family DBB
Protein Properties Length: 187aa    MW: 20761.5 Da    PI: 6.9249
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.106670.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.91.8e-07433534
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                     C+ +e+  ++ fC  ++  lC++C ++ H
  Cucsa.106670.2  4 LCDACEKAAAIVFCAADEAALCRSCDEKVH 33
                    7******99******************998 PP
2zf-B_box27.66e-095292238
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                    + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  Cucsa.106670.2 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtHK 92
                    5799**************************99966666787 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.31147IPR000315B-box-type zinc finger
SMARTSM003365.1E-8147IPR000315B-box-type zinc finger
PfamPF006437.8E-6342IPR000315B-box-type zinc finger
CDDcd000212.07E-5345No hitNo description
PROSITE profilePS501199.1865196IPR000315B-box-type zinc finger
SMARTSM003365.1E-115196IPR000315B-box-type zinc finger
PfamPF006431.1E-65292IPR000315B-box-type zinc finger
CDDcd000212.48E-65493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MRTLCDACEK AAAIVFCAAD EAALCRSCDE KVHMCNKLAS RHVRVGLANP SDVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HKRYLLLRQR VEFPGDKPIN LDDPSPHSKV  120
PNEIGKVHNQ PPPHKVTVED NQQNHHRLSP VREANDDGHA ETDTKMIDLN MKPHRVHGQA  180
ANNQDL*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818731e-122LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132611e-122LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146516.11e-137PREDICTED: B-box zinc finger protein 18-like
SwissprotC0SVM51e-73BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A0A0KUM11e-135A0A0A0KUM1_CUCSA; Uncharacterized protein
STRINGXP_004160959.11e-136(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.15e-76DBB family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]