PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.106970.1

Common Name

Csa_4G050130, LOC101221558

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 201aa MW: 22446.2 Da PI: 7.8606

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.106970.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	101.7	4.1e-32	121	179	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk s++prsYYrCt+++C+vkk+++r +dp++v++tYeg Hnh+ Cucsa.106970.1 121 LDDGYRWRKYGQKAVKHSNHPRSYYRCTHHTCNVKKQIQRHPKDPTIVVTTYEGIHNHP 179 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	6.8E-33	108	180	IPR003657	WRKY domain
SuperFamily	SSF118290	9.42E-28	116	180	IPR003657	WRKY domain
PROSITE profile	PS50811	28.392	116	181	IPR003657	WRKY domain
SMART	SM00774	9.6E-37	121	180	IPR003657	WRKY domain
Pfam	PF03106	5.1E-25	122	179	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 201 aa Download sequence Send to blast
MGDDNINQMG STSSSSMMNN CEIIDWDGLF SSSCLSNNLE MVEKGICGSD QDDNNYYPMG 60 DNNNNVVIGG VKEGDIIIGG GHNNNNNNNN CKYKGKMVMG KRSTIASPRI AFQTKSVEDV 120 LDDGYRWRKY GQKAVKHSNH PRSYYRCTHH TCNVKKQIQR HPKDPTIVVT TYEGIHNHPS 180 EKLMETLTPL LKQLQFLSGI *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-24	111	178	7	74	Probable WRKY transcription factor 4
2lex_A	6e-24	111	178	7	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00539	DAP	Transfer from AT5G41570	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681873	1e-155	LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBank	LN713261	1e-155	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011653192.1	1e-148	PREDICTED: probable WRKY transcription factor 24
Swissprot	Q9FFS3	1e-53	WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBL	A0A0A0KZP6	1e-146	A0A0A0KZP6_CUCSA; Uncharacterized protein
STRING	XP_004146569.1	1e-126	(Cucumis sativus)
STRING	XP_004170512.1	1e-126	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3227	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41570.1	2e-55	WRKY DNA-binding protein 24

Link Out ? help Back to Top
Phytozome	Cucsa.106970.1
Entrez Gene	101221558

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]