PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.106970.2
Common NameCsa_4G050130, LOC101221558
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family WRKY
Protein Properties Length: 197aa    MW: 21876.5 Da    PI: 7.5319
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.106970.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.24.6e-25121175159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk s++pr    Ct+++C+vkk+++r  +dp++v++tYeg Hnh+
  Cucsa.106970.2 121 LDDGYRWRKYGQKAVKHSNHPR----CTHHTCNVKKQIQRHPKDPTIVVTTYEGIHNHP 175
                     59*******************6....********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-26108176IPR003657WRKY domain
SuperFamilySSF1182907.59E-22116176IPR003657WRKY domain
PROSITE profilePS5081122.423116177IPR003657WRKY domain
SMARTSM007741.4E-29121176IPR003657WRKY domain
PfamPF031065.7E-18122175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MGDDNINQMG STSSSSMMNN CEIIDWDGLF SSSCLSNNLE MVEKGICGSD QDDNNYYPMG  60
DNNNNVVIGG VKEGDIIIGG GHNNNNNNNN CKYKGKMVMG KRSTIASPRI AFQTKSVEDV  120
LDDGYRWRKY GQKAVKHSNH PRCTHHTCNV KKQIQRHPKD PTIVVTTYEG IHNHPSEKLM  180
ETLTPLLKQL QFLSGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-19111174774Probable WRKY transcription factor 4
2lex_A5e-19111174774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818731e-155LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBankLN7132611e-155LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011653192.11e-127PREDICTED: probable WRKY transcription factor 24
SwissprotQ9FFS34e-48WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A0A0KZP61e-125A0A0A0KZP6_CUCSA; Uncharacterized protein
STRINGXP_004146569.11e-144(Cucumis sativus)
STRINGXP_004170512.11e-144(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.17e-50WRKY DNA-binding protein 24
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]