PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.108830.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HB-PHD
Protein Properties Length: 914aa    MW: 100955 Da    PI: 4.8695
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.108830.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox40.16.4e-13731781656
                     S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     ++++  le+L + F++n yp++++++ LA++lgL  +qV+ WF N R   +
  Cucsa.108830.1 731 RLSQPALERLLASFQENEYPKRATKQSLAQELGLGLKQVSKWFENTRWSTR 781
                     678999*****************************************8766 PP
2PHD37.55.3e-13354409151
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                     +C+ Cg+     e++++lCdg C++ fH+ Cl+++l ++++p +   wlC+ C++k
  Cucsa.108830.1 354 FCAKCGSkeLSLENDIILCDGiCDRGFHQFCLEPPLLNTDIPPDdeGWLCPGCDCK 409
                     6999**965556********88*******************99999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579036.64E-13344412IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.2E-12350408IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.95352409IPR019787Zinc finger, PHD-finger
SMARTSM002491.8E-9354407IPR001965Zinc finger, PHD-type
PfamPF006281.5E-10354409IPR019787Zinc finger, PHD-finger
CDDcd155042.21E-27354406No hitNo description
PROSITE patternPS013590355406IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.603.9E-13717777IPR009057Homeodomain-like
SuperFamilySSF466892.4E-12718783IPR009057Homeodomain-like
PROSITE profilePS5007113.572723783IPR001356Homeobox domain
SMARTSM003891.3E-10726787IPR001356Homeobox domain
CDDcd000868.87E-11730783No hitNo description
PfamPF000461.6E-10731781IPR001356Homeobox domain
PROSITE patternPS000270758781IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 914 aa     Download sequence    Send to blast
MKERDENTVT ESRPNNNAEA AQEGKASDNM EERDENTDTE SRPNKIAEAV QEAKASVEVE  60
VLTCLSNEAK YSGYQELGTT PEFSSKIDGP DEEKAGVQQN MELGSGYLLS ELSEKDNQTI  120
SNHADNDRVE AGNLLSNDKD TKNLKLSIED EATTLLNECS ELPLEDVTKN YIEKMNPPIG  180
DLTQITSIQS LETIPSNSQQ SARKDKIFLK SKKKNYKLRS HVSSDRVLRS RTQEKAKAPE  240
RKDGKRKKKK KRNIQGKGAR VDEYSSIRNH LRYLLNRIRY EQSLIEAYSS EGWKGFSSDK  300
LKPEKELQRA SNEIMRRKLK IRDLFQRIDA LCAEGRLSES LFDSEGQIDS EDIFCAKCGS  360
KELSLENDII LCDGICDRGF HQFCLEPPLL NTDIPPDDEG WLCPGCDCKD DCLDLLNEFQ  420
GSNLSITDGW EKVYPEAAAA AAGRNSDHTL GLPSDDSEDG DYDPDVPDTI DQDNELSSDE  480
SSSDQSNSDP SNSDTSGYAS ASEGLEVSSN DDQYLGLPSD DSEDNDYDPS VPELDEGVRQ  540
ESSSSDFTSD SEDLAALDNN CSSKDGDLVS SLNNTLPVKN SNGQSSGPNK SALHNELSSL  600
LDSGPDKDGL EPVSGRRQVE RLDYKKLHDE TYGNVPTDSS DDTYGSTLDS SDDRGWDSGT  660
RKRGPKTLVL ALSNNGSNDD LTNVKTKRSY KRRTRQKPGA INVNNSVTET PVDTAKSSSS  720
VKKSTSSSNR RLSQPALERL LASFQENEYP KRATKQSLAQ ELGLGLKQVS KWFENTRWST  780
RHPSSSGKKA KSSSRMSIYL SQASGELSKN EPESATCFRD TDSNGARHQD LPMANSVVAS  840
CQSGDTGDKK LSSRKTKRAD SSATKSRKRK GRSDNTASHS KDREGSPRPP AKSPKVNEMQ  900
TADRFKTRRR RSI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245251RKKKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818510.0LN681851.1 Cucumis melo genomic scaffold, anchoredscaffold00038.
GenBankLN7132600.0LN713260.1 Cucumis melo genomic chromosome, chr_6.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011651230.10.0PREDICTED: homeobox protein HOX1A
RefseqXP_011651231.10.0PREDICTED: homeobox protein HOX1A
RefseqXP_011651232.10.0PREDICTED: homeobox protein HOX1A
TrEMBLA0A1S3C2830.0A0A1S3C283_CUCME; pathogenesis-related homeodomain protein
STRINGXP_004140812.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.16e-77Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain