PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.113100.1
Common NameCsa_1G039050, LOC105434710
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 506aa    MW: 56602.9 Da    PI: 8.3311
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.113100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0009783101321
                     ETTTTEEESSHHHHHHHHH CS
         zf-C2H2   3 CpdCgksFsrksnLkrHir 21 
                     C  CgksF ++  L  H++
  Cucsa.113100.1  83 CRECGKSFQSWKALFGHMK 101
                     ******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139124.9E-5931IPR007087Zinc finger, C2H2
SMARTSM003550.46931IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.11E-6931No hitNo description
PROSITE profilePS501579.868941IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SuperFamilySSF576671.11E-676103No hitNo description
SMARTSM003550.03181103IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.07481108IPR007087Zinc finger, C2H2
PfamPF139125.5E-783104IPR007087Zinc finger, C2H2
PROSITE patternPS00028083103IPR007087Zinc finger, C2H2
SuperFamilySSF576677.02E-5334362No hitNo description
PfamPF139122.7E-9336360IPR007087Zinc finger, C2H2
SMARTSM003550.25336358IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.242336363IPR007087Zinc finger, C2H2
PROSITE patternPS000280338358IPR007087Zinc finger, C2H2
PfamPF139124.8E-9416440IPR007087Zinc finger, C2H2
SMARTSM003550.3417439IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.265417439IPR007087Zinc finger, C2H2
PROSITE patternPS000280419439IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MEANREFKHF CKLCNRSFPC GRSLGGHMRS HFINSETGEN PKKMNLKKAG KFLGDGTSDG  60
YSLRKNPRKT CKLAEFSAED RFCRECGKSF QSWKALFGHM KCHSTETERV SSNLEFDSQS  120
DNETAGANRG KRSRKQTRYM AAEISSSFSF AAIAAAAASS SVSDQNDQEQ EEVALCLMML  180
SRDVGGFYST TESSDNNFMP KQVPSLVPKN HFSKVVEAIP SVYMGQLKDF HSRKLKLSEM  240
DSGCLKFEES NSEISASAVK MNKNEEKFQQ DDIFGSSSNN QTDINQPQFN SSKFNSDQRK  300
FHELSNGELR SNSFRRSTPN ELNSESYKSK GKRSKFQCNS CNKIFHSYQA LGGHRASHKK  360
TKGCLASKTE NSENSIETEI SNDPTFESKS TATALEVENH QESEIHMGYE KKIRKHHQCS  420
ICFKIFSSGQ ALGGHKRSHL INGSESRNKL PETKSNQKPE AEIRDYLDLN LPAPIDEEGS  480
SHLGSMEPWW VGGSHSHEQA LVGLI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650095.10.0PREDICTED: zinc finger protein ZAT4-like
TrEMBLA0A0A0LQK80.0A0A0A0LQK8_CUCSA; Uncharacterized protein
STRINGXP_008448369.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.15e-27C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]