PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.113470.1

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 213aa MW: 23368.1 Da PI: 9.0108

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.113470.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	116.1	1.4e-36	73	130	5	62
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++cprC+s +tkfCyynny+ sqPr+fCk+CrryWt GG lrn+PvGgg+rk+kk+s Cucsa.113470.1 73 KSQCPRCNSLHTKFCYYNNYNYSQPRHFCKTCRRYWTLGGLLRNIPVGGGTRKSKKNS 130 689***************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-20	57	122	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.5E-31	74	128	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	27.941	74	128	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	76	112	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
LPPSLTWRSL SLPLPPRVSP TPPPSSSAAA DFPSLTFTLS TLSSLSNKYG FPTHNASAEL 60 GLMDFQSKPN ELKSQCPRCN SLHTKFCYYN NYNYSQPRHF CKTCRRYWTL GGLLRNIPVG 120 GGTRKSKKNS KAKRATFTDS ACNSNSDLDM LSSPLKLNNQ AGDFQWNGRE FEAGDPAAEE 180 GLFGLDQLPT SSGDNNGSSW LNFYGLTHPF NN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	1e-161	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	1e-161	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004137607.1	1e-109	PREDICTED: dof zinc finger protein DOF1.7-like
TrEMBL	A0A0A0LTJ9	1e-107	A0A0A0LTJ9_CUCSA; Uncharacterized protein
STRING	XP_004157480.1	1e-108	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21361	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	9e-27	OBF binding protein 4

Link Out ? help Back to Top
Phytozome	Cucsa.113470.1