PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.114700.1

Common Name

Csa_4G055350, LOC101206472

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Trihelix

Protein Properties

Length: 275aa MW: 32712.8 Da PI: 8.0097

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.114700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	61.5	2e-19	9	97	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+++e+++ i++r ++e++l + + +kk+lWe s +mre+gf r++ qCk+kw+nl ryk +++ k+ +cp+f++++ Cucsa.114700.1 9 QWSEEETREFIRIRADLEKDLAAVSigeapaaKKKTLWEMASVRMREKGFWRTADQCKCKWKNLLSRYKGKETSHKEY----GWQCPFFEEIH 97 7*******************8544445555**********************************99999984....558***998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-17	8	98	No hit	No description
CDD	cd12203	1.65E-16	9	80	No hit	No description
PROSITE profile	PS50090	6.829	10	73	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MAATPHQHQW SEEETREFIR IRADLEKDLA AVSIGEAPAA KKKTLWEMAS VRMREKGFWR 60 TADQCKCKWK NLLSRYKGKE TSHKEYGWQC PFFEEIHAVF TERGKAMHRL LLEPEACSIS 120 TKKRGRERSL EEHSDLKELN EDENEEEVTF TQSNSQKRKA ARKLPAKSLG ATDSKSSSSS 180 TSNEIQEMLK GFFQWQQRME MEWREIVERH YNNRRMFEQE WRESMEKLER ERLMAEQAWR 240 EREEQRKERQ DIRAEGMNAL LTTLLNKLNH ENNL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681873	0.0	LN681873.1 Cucumis melo genomic scaffold, anchoredscaffold00027.
GenBank	LN713261	0.0	LN713261.1 Cucumis melo genomic chromosome, chr_7.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004148982.1	0.0	PREDICTED: trihelix transcription factor GT-3b-like
TrEMBL	A0A0A0KV13	0.0	A0A0A0KV13_CUCSA; Uncharacterized protein
STRING	XP_004148982.1	0.0	(Cucumis sativus)
STRING	XP_004164548.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1781	33	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38250.1	3e-23	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Cucsa.114700.1
Entrez Gene	101206472

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]