PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.117060.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 476aa    MW: 53597.1 Da    PI: 7.0149
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.117060.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.3e-12283327554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h ++ErrRR+++N++f  Lr++lP++     +K +Ka++L  A eY+ +L
  Cucsa.117060.1 283 HMIAERRRREKLNESFLALRSILPPQ-----TKKDKASVLATAREYLTKL 327
                     7799*********************9.....8**************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.66E-12278332No hitNo description
PROSITE profilePS5088814.85278327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.89E-17279354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-14283341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9283327IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-12284333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEIVFSLNQD ARASFLHSLL QSVHSTYICI WSYLPHPSNC LMNLDGLFRE DEDDDQKKQP  60
SSSLGSFQRR LFNEYTQVIF SLENNLVPGH AFKNKISFLE VRESVLLTHS SSRIQTQFYA  120
SVVFMGSSNG EIELGFSQVE MVEEMKQTNQ ILFPAWEEVS SIIMASSSDQ LPPNIIPSSL  180
SPKSPSIEET PEIPSLLFYN DLSTIPLLPL PPDRSSLSGG SRESAFEEYN VKKAAVEGAE  240
ENQKRESLMK KGLVFYRKLK KMRIGERIII EAAKRPASAQ LIHMIAERRR REKLNESFLA  300
LRSILPPQTK KDKASVLATA REYLTKLKAQ VSELSHRNHI LLQAQDPHIR TVHHQPTTPT  360
SSLNQQFTVN VSYEPPPPGS TDETIVVDLE IIIRGDSSQL MTDTAIRILQ FLKSIVNARV  420
VLSFHANHMI APSPLTRLGF RFSLQGGEWD ESAFLEAVRR IVSDLPSLSS YQNKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1286291ERRRRE
2287292RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650092.10.0PREDICTED: putative transcription factor bHLH041, partial
TrEMBLA0A1S3C9K10.0A0A1S3C9K1_CUCME; putative transcription factor bHLH041 isoform X2
STRINGXP_004141168.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41503354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.11e-34bHLH family protein