PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.117790.1
Common NameCsa_1G523110, LOC101218350
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 675aa    MW: 75121.2 Da    PI: 9.49
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.117790.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07575624147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   Cucsa.117790.1 575 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 624
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.78E-7378466IPR029071Ubiquitin-related domain
PROSITE profilePS500539.374384454IPR000626Ubiquitin domain
PROSITE profilePS5129415.565570629IPR017930Myb domain
SMARTSM007172.0E-7574627IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10575625IPR009057Homeodomain-like
SuperFamilySSF466891.11E-15576657IPR009057Homeodomain-like
CDDcd116601.73E-16576626No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MVLQKRLDYG FHGYQVPTKP RATRSARKRS LCRKGTEGSQ MRAFDLLATV ADKLLHGTDG  60
PTTTATDTST VNDRNAVMNK ELDANSLLKV EPSDGGSCYQ GLVPETILSG HNKKCDRNDS  120
LPQHDEHSPQ LVSIVTNFEK CRKEMENLVS EVHLGSPSSK ESDNCELDRK HKVTVKYELH  180
KTEELLTGAQ NQDDSCKRED PVIWDQKARL LGNNSDSCGK MTQDKKFVQN SSFATQNNVK  240
VDDRDDDENS SGCTHPVSSI KSFRTLPSSR DRRIRKVSAS KSWKVVPRYR DESLSKSDGS  300
WKSMFRSKSS HDSCRRQKSQ MNIPFKKRKF FDCTSTVSNS DGGINSEGLS DSTGKVVNTD  360
KSGRSCSASG QGHQKSFPSK DSHVKIRIKS FRVPELFIEI AETATVGSLK RTVMEAVTAI  420
LGGGLRVGVL LQGKKIRDDN KTLFQTGISH DNQLDSLGFA LEPNPSRTPH ALDQEDCPCI  480
LPHDAAEPPT RYSRNASADN PGSSTVLSEP HGDSLGNFIE SDHDSAPSPT DTSNHKSSTD  540
SKALVTVPEM TVEALNVVPM HRKSKRSEVA QRRIRRPFSV AEVEALVQAV EKLGTGRWRD  600
VKLRAFDNAK HRTYVDLKDK WKTLVHTARI SPQQRRGEPV PQELLDRVLT AHAYWSKQQA  660
KYQLKRQPET CLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-565596611103Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819260.0LN681926.1 Cucumis melo genomic scaffold, anchoredscaffold00044.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004153447.10.0PREDICTED: telomere repeat-binding protein 5
RefseqXP_011658220.10.0PREDICTED: telomere repeat-binding protein 5
TrEMBLA0A0A0M0I90.0A0A0A0M0I9_CUCSA; Uncharacterized protein
STRINGXP_004153447.10.0(Cucumis sativus)
STRINGXP_004164871.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13562844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-132TRF-like 2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]