PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.119170.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 173aa    MW: 19778.7 Da    PI: 9.2178
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.119170.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-10451655
                    HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                    + +E++RR +++s +++L +llP+ +    +   + ++  e A++YIksL+
  Cucsa.119170.1  4 KVMEKNRRTKMKSLYSKLSSLLPShQ---LNLPRTVSDQIEAAINYIKSLE 51
                    689*********************55...9*******************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.128150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.54E-11367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-9365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-4456IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-7451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MERKVMEKNR RTKMKSLYSK LSSLLPSHQL NLPRTVSDQI EAAINYIKSL ETKLKQDEEK  60
KEGYLRRSKM ASPSTASSSS SYSALPITHN RNVPELKIKE MGPAVEVVLT TGLEDRSLFY  120
DTIRILNEER AEIINVSYSL LDNTILYSLH AEIEDVVFDF GGTKKLIERL NQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819181e-127LN681918.1 Cucumis melo genomic scaffold, anchoredscaffold00020.
GenBankLN7132651e-127LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016900533.12e-78PREDICTED: transcription factor bHLH36-like isoform X2
TrEMBLA0A1S4DX344e-77A0A1S4DX34_CUCME; transcription factor bHLH36-like isoform X2
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.11e-24bHLH family protein