PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.120620.2
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family SBP
Protein Properties Length: 226aa    MW: 24507.2 Da    PI: 6.9832
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.120620.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP74.61.6e-23160207148
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
                     +Cq+egC+adls+ak+yhrrhkvCe+hs a++v+++gl+qrfCqqCsr
  Cucsa.120620.2 160 RCQAEGCNADLSQAKHYHRRHKVCEFHSTASTVITAGLTQRFCQQCSR 207
                     6**********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.7E-24155207IPR004333Transcription factor, SBP-box
PROSITE profilePS5114117.606158225IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.53E-21159207IPR004333Transcription factor, SBP-box
PfamPF031103.2E-17161207IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MLDYEWGSTN PPPIILSGEE SEPVFNSVPS HSHNFPTFVD LHHHNTFLNP PPPPPPSTAA  60
FSSHLGGFYN HPQSYTMGAS SSHHYNSVTG GGGEFMLVPK SENVCGSIGA AAPAEFAARI  120
GLNLGGRTYF SSEEEEFVNR LYRRTRTGSE MGGSGNWAVR CQAEGCNADL SQAKHYHRRH  180
KVCEFHSTAS TVITAGLTQR FCQQCSRGFY SSGQVCVFVL VVGFM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A6e-19158207352squamosa promoter-binding protein-like 12
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819240.0LN681924.1 Cucumis melo genomic scaffold, anchoredscaffold00047.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140489.11e-153PREDICTED: squamosa promoter-binding-like protein 8
RefseqXP_011656869.11e-153PREDICTED: squamosa promoter-binding-like protein 8
TrEMBLA0A0A0KA351e-151A0A0A0KA35_CUCSA; Uncharacterized protein
STRINGXP_004163755.11e-153(Cucumis sativus)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.28e-47squamosa promoter binding protein-like 8