PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.121080.1
Common NameCsa_6G104640, LOC101219717
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 214aa    MW: 23639 Da    PI: 6.1706
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.121080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-184596156
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    ++++GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g+
  Cucsa.121080.1 45 PKFRGVRLRA-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKGH 96
                    79*****998.**********843...6***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.7E-134596IPR001471AP2/ERF domain
CDDcd000184.81E-3145103No hitNo description
SMARTSM003801.7E-3546109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.5E-3146104IPR001471AP2/ERF domain
PROSITE profilePS5103222.89346103IPR001471AP2/ERF domain
SuperFamilySSF541713.66E-2146104IPR016177DNA-binding domain
PRINTSPR003671.2E-94758IPR001471AP2/ERF domain
PRINTSPR003671.2E-96985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MTTNSHHSTT SSSAVSCLTA TSRKRQRSST SSATESESDQ ESSTPKFRGV RLRAWGKWVS  60
EIREPRKKSR IWLGTYPTAE MAARAHDVAA LAIKGHRAFL NFPQLKHQLP RPASLSAKDI  120
QAAAAQAAAL KHEPETPTSC LEEGLEEEEE ESTWFDLPDL IVSNGFLLGL DENYSSSCSS  180
SSSSSSSWQF LVDDHEDNHF QWHSDFSHTI FPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16461031472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819250.0LN681925.1 Cucumis melo genomic scaffold, anchoredscaffold00052.
GenBankLN7132650.0LN713265.1 Cucumis melo genomic chromosome, chr_11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004140628.11e-155PREDICTED: ethylene-responsive transcription factor ERF039-like
TrEMBLA0A0A0KAN01e-154A0A0A0KAN0_CUCSA; Uncharacterized protein
STRINGXP_004140628.11e-155(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2454933
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.11e-39ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]