PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.122080.1
Common NameCsa_1G042960, LOC101210254
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NF-X1
Protein Properties Length: 1105aa    MW: 120669 Da    PI: 8.108
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.122080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.62e-06296314119
        zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                     CG+H C+k+CH G C+pC+
  Cucsa.122080.1 296 CGRHWCEKICHVGTCDPCQ 314
                     ******************6 PP
2zf-NF-X121.93.7e-07418435118
        zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                     CGkH+C++ CH G+C pC
  Cucsa.122080.1 418 CGKHRCKEVCHAGDCAPC 435
                     ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578503.53E-5118188No hitNo description
PROSITE profilePS500168.564126187IPR019787Zinc finger, PHD-finger
PROSITE profilePS500899.524129185IPR001841Zinc finger, RING-type
PROSITE patternPS013590129184IPR019786Zinc finger, PHD-type, conserved site
CDDcd060081.49E-5218279No hitNo description
SMARTSM004380.039241259IPR000967Zinc finger, NF-X1-type
PfamPF014221.8243258IPR000967Zinc finger, NF-X1-type
CDDcd060081.11E-10286334No hitNo description
PfamPF014228.1E-5296313IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0019296315IPR000967Zinc finger, NF-X1-type
CDDcd060081.62E-9350393No hitNo description
PfamPF014220.0072360377IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0045360379IPR000967Zinc finger, NF-X1-type
CDDcd060081.80E-13408456No hitNo description
PfamPF014227.6E-6418435IPR000967Zinc finger, NF-X1-type
SMARTSM004381.3E-4418437IPR000967Zinc finger, NF-X1-type
PfamPF0142218476487IPR000967Zinc finger, NF-X1-type
PfamPF014220.085508532IPR000967Zinc finger, NF-X1-type
CDDcd060085.22E-7508547No hitNo description
SMARTSM004380.015514533IPR000967Zinc finger, NF-X1-type
CDDcd060083.60E-5561609No hitNo description
PfamPF014227.7571588IPR000967Zinc finger, NF-X1-type
SMARTSM004380.023571589IPR000967Zinc finger, NF-X1-type
PfamPF014220.0054624639IPR000967Zinc finger, NF-X1-type
SMARTSM004380.17624654IPR000967Zinc finger, NF-X1-type
CDDcd060089.57E-5652701No hitNo description
PfamPF0142216656682IPR000967Zinc finger, NF-X1-type
SMARTSM004380.089663684IPR000967Zinc finger, NF-X1-type
PfamPF014241.6E-5793857IPR001374R3H domain
Gene3DG3DSA:3.30.70.3305.0E-7896961IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1105 aa     Download sequence    Send to blast
MSSNVRNVRK DRSRIPASSA RKEWVPRGST TIPTTTATTD IHVNQPLNVN LNGNRNEQEP  60
NSSPPHPVYR DRGNHGQRVH VGPRRNQRKD KEKDKEKSGD QGEKDLRISN LPQLVHEIQE  120
KLTKGTVECM ICYDMVRRSA PIWSCSSCFC IFHLTCIKKW ARAPTSTDLV AEKNQGLNWR  180
CPGCQSVQLI SSKEIRYVCF CGKRQDPPSD LYLTPHSCGE PCGKPLDREM LVAGGSKEDL  240
CPHNCVLQCH PGPCPPCKAF APPRLCPCGK KLITTRCSDR KSTLTCGQRC EKLLDCGRHW  300
CEKICHVGTC DPCQVQVSAS CFCKKKKELV LCGSMALKGE VNTEDGVFPC SSICGKGLNC  360
GNHVCREICH PGPCGGCELM PDMIRTCYCG KTRLQDERTS CLDPIPTCSE LCEKLLPCGK  420
HRCKEVCHAG DCAPCLVQVV QKCRCGSTSR NVECYKTSSP TDIFTCEKPC EWKKNCGRHR  480
CSERCCPLSN SSYNHLGDWD PHFCVMRCGK KLRCRQHSCQ SLCHSGHCSP CPETIFTDLT  540
CACGKTSIPP PLPCGTPPPS CQFPCSVPQP CGHSSTHSCH FGDCPPCTVP IAKECIGGHV  600
VLRNIPCGSR DIRCNKLCGK TRQCGMHACN RTCHPPPCDT AAGSESVQKT SCGQTCGAPR  660
RDCRHTCTAP CHPSAPCPDA RCEFPVIITC SCGRITASVP CDAGGSSINF NTDALYASII  720
QKLPVPLQPI EATGKKIPLG QRKLTCDDEC SKLERNRVLA DAFDITPPNL DALHFGDSSA  780
TELLADLFRR DSKWVLAVEE RCKFLVLGKN RGGIGGLKVH VFCPMPKDKR DAVRLIAERW  840
KVAINSVGWE PKRFITIHVT PKSKVPPRVL GIKGSTTIST LHPPPFDPLV DMDPRLVVSF  900
PDLPRESDIS ALVLRFGGEC ELVWLNDKNA LAVFSDPARA ATAMRRLDHG TAYHGASLLQ  960
NGGASASSNT NAWGGGENAK EGGASKSSNP WKRAVVQDSS WKDTSWGDEE WSGPSIDVQA  1020
SVWKREAAPF SASLNRWHAL DTEPSVSSST QSPEHKLGNR VGNPSLGSES STSRSLSSGG  1080
VMQVVTDDGT NTSEVADDWE KAYD*
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650913.10.0PREDICTED: NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0A0LVX40.0A0A0A0LVX4_CUCSA; Uncharacterized protein
STRINGXP_008466671.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]