PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.122790.1
Common NameCsa_4G628890, LOC101210452
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bZIP
Protein Properties Length: 339aa    MW: 37098.3 Da    PI: 6.6915
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.122790.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_134.83.6e-11203248550
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                     kr +r   NR +A+rsR RK+++i eLe+ v +L++e +aL  ++ 
  Cucsa.122790.1 203 KRVKRILANRQSAQRSRVRKLQYISELERNVTTLQTEVSALSPRVA 248
                     8999*********************************999987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-13199263IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.749201253IPR004827Basic-leucine zipper domain
PfamPF001708.5E-10203248IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.1E-14203254No hitNo description
SuperFamilySSF579597.74E-12203257No hitNo description
CDDcd147031.99E-24204254No hitNo description
PROSITE patternPS000360206221IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAQLPPKIPS FPQNWPPFPP PPTSMPNSLS SPPPPPPSST SSSAASWLDD FLDFSTARRG  60
LHRRSISDSI AFLETTTTTT TNNNINNPFS DQCRNSSSAA LLHPPPPFDR LDDDQLMSMF  120
SDDISIPQLP PNSPSNPSTP SDQNSNNDDK NTPTDEVMFS SPLPPPMKNE PADGEISSSS  180
QVLQQSQPPP PPSSAVDNSI DPKRVKRILA NRQSAQRSRV RKLQYISELE RNVTTLQTEV  240
SALSPRVAFL DHQRLILNVD NSALKQRIAA LAQDKIFKDA HQEALKKEIE RLRQVYHQQS  300
MKKMSNNQNG AAQPQAALSG EGTPPSKAGE TEKEKALS*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator. {ECO:0000269|PubMed:17719007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818620.0LN681862.1 Cucumis melo genomic scaffold, anchoredscaffold00081.
GenBankLN7132610.0LN713261.1 Cucumis melo genomic chromosome, chr_7.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146037.20.0PREDICTED: basic leucine zipper 34
SwissprotQ9M2K42e-93BZP61_ARATH; Basic leucine zipper 61
TrEMBLA0A0A0L3C00.0A0A0A0L3C0_CUCSA; Uncharacterized protein
STRINGXP_004146037.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20113488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58120.12e-76bZIP family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  5. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  6. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]