PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.124260.1

Common Name

Csa_6G445020, LOC101221389

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

C2H2

Protein Properties

Length: 426aa MW: 47150 Da PI: 9.6294

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.124260.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.5e-05	98	120	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Cucsa.124260.1 98 FICEICNKGFQRDQNLQLHRRGH 120 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.1E-5	97	120	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.25E-5	97	120	No hit	No description
Pfam	PF12171	4.9E-5	98	120	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.845	98	120	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	100	120	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	3.5E-4	165	198	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.25E-5	172	197	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 426 aa Download sequence Send to blast
MMMSGIDFSV SSNCIGEFGD HHRHQQQTSQ LSHNHHHHLL RLNPNPIPNP IIQNLDSSSA 60 SSLPPSLPKK KRNLPGKPDP DAEVIALSPN TLMATNRFIC EICNKGFQRD QNLQLHRRGH 120 NLPWKLRQRS SKEAVIVKKK VYICPEKCCV HHDPSRALGD LTGIKKHYSR KHGEKKWKCE 180 KCCKKYAVQS DWKAHSKTCG TRDYKCDCGT LFSRKDSFIT HRAFCDALAE ESAKLISSVT 240 SPNSRLNFIA SNNNSIIKSQ FQDHNFESSP YIPQILPPTN NLFQISNQVL SLNNKNNNHN 300 PSKTAIMNLT LSSFTHKQQQ QQQSVAAYDN SPSFCSATGG GGGGMSATAL LLKAAQLGST 360 KSNDNSFCSR SNSVGVVMSS SSSSNNISVE NGNYFGGKGN GLKDFFWEEG IRRRVDYSIN 420 GVGDD*

Sequence ? help Back to Top

Protein Sequence Length: 426 aa Download sequence Send to blast

MMMSGIDFSV SSNCIGEFGD HHRHQQQTSQ LSHNHHHHLL RLNPNPIPNP IIQNLDSSSA  60
SSLPPSLPKK KRNLPGKPDP DAEVIALSPN TLMATNRFIC EICNKGFQRD QNLQLHRRGH  120
NLPWKLRQRS SKEAVIVKKK VYICPEKCCV HHDPSRALGD LTGIKKHYSR KHGEKKWKCE  180
KCCKKYAVQS DWKAHSKTCG TRDYKCDCGT LFSRKDSFIT HRAFCDALAE ESAKLISSVT  240
SPNSRLNFIA SNNNSIIKSQ FQDHNFESSP YIPQILPPTN NLFQISNQVL SLNNKNNNHN  300
PSKTAIMNLT LSSFTHKQQQ QQQSVAAYDN SPSFCSATGG GGGGMSATAL LLKAAQLGST  360
KSNDNSFCSR SNSVGVVMSS SSSSNNISVE NGNYFGGKGN GLKDFFWEEG IRRRVDYSIN  420
GVGDD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-35	173	237	3	67	Zinc finger protein JACKDAW
5b3h_F	3e-35	173	237	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681842	0.0	LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143353.2	0.0	PREDICTED: protein indeterminate-domain 9-like
TrEMBL	A0A0A0KIB8	0.0	A0A0A0KIB8_CUCSA; Uncharacterized protein
STRING	XP_008449264.1	0.0	(Cucumis melo)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45260.1	3e-96	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Cucsa.124260.1
Entrez Gene	101221389

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]