PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.124600.1

Common Name

Csa_6G446400

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

TCP

Protein Properties

Length: 208aa MW: 22215 Da PI: 8.3552

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.124600.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	109.4	5.2e-34	54	134	6	86
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 ++++++h kv+gR+RRvR++a+caar+F+L++eLG+ + ++tieWLl+qa+p+i+++tgt++ ++ +++ss ++s s Cucsa.124600.1 54 SSSKDRHIKVNGRGRRVRMPALCAARIFQLTRELGHRSEGETIEWLLRQAEPSIIAATGTGTVPSGPISTVSSAMASSGRS 134 689*********************************************************888884444444443333332 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.5E-30	55	172	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.537	56	110	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MGSDIVLHKF PSSSDPHSQP PTASHSVVGS NSSPVTITRQ SLLPRKSNTP LSSSSSKDRH 60 IKVNGRGRRV RMPALCAARI FQLTRELGHR SEGETIEWLL RQAEPSIIAA TGTGTVPSGP 120 ISTVSSAMAS SGRSVSCRVQ PVSVGGSGQG MFAMPPPSCR LDLCQPVGME YSAAGNDYRH 180 MPFTALLLQP STAEETEERQ EEEVFRE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681876	0.0	LN681876.1 Cucumis melo genomic scaffold, anchoredscaffold00068.
GenBank	LN713262	0.0	LN713262.1 Cucumis melo genomic chromosome, chr_8.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004143267.1	1e-149	PREDICTED: transcription factor TCP11-like
Swissprot	Q9SJK7	2e-44	TCP11_ARATH; Transcription factor TCP11
TrEMBL	A0A0A0KH86	1e-146	A0A0A0KH86_CUCSA; Uncharacterized protein
STRING	XP_004156285.1	1e-147	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3819	33	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37000.1	8e-43	TCP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.124600.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]