PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.126730.1

Common Name

Csa_1G074400, LOC101210203

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 205aa MW: 23251.2 Da PI: 6.5301

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.126730.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.8	5.1e-10	16	64	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + +Er+RR++++ f++L +llP+ + + Le A++YIk+Lq Cucsa.126730.1 16 KFVERNRRKEMKALFSTLNSLLPNqT--SMEAPRTVPDQLEDATNYIKELQ 64 568*******************44..577779999***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.93E-11	9	76	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.28	10	63	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.08E-6	12	65	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.7E-10	14	77	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0014	16	69	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.2E-7	17	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
MSNPIRCQPT PQSNRKFVER NRRKEMKALF STLNSLLPNQ TSMEAPRTVP DQLEDATNYI 60 KELQKNIKKL KEKKEKLIGM EEDEEAEGRR RRRGYEDETK PKLSVHVKAH QIGSSVEVFL 120 TTGSDYHFNL QQVLRLLQDN GAEILNVNQS MFTDRVFHKI TAQVDGEGIL GGGDGERICE 180 TVKKYVSEYK DGECSVEGNG GEDF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681932	1e-132	LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBank	LN713266	1e-132	LN713266.1 Cucumis melo genomic chromosome, chr_12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004146605.1	1e-150	PREDICTED: transcription factor bHLH118-like
TrEMBL	A0A0A0LUL3	1e-149	A0A0A0LUL3_CUCSA; Uncharacterized protein
STRING	XP_004165574.1	1e-150	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21409	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	4e-16	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.126730.1
Entrez Gene	101210203

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]