PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.126880.1
Common NameCsa_1G075060, LOC101203021
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 188aa    MW: 20761 Da    PI: 10.0103
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.126880.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.74e-20252256
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +++GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++aa++k++g+
  Cucsa.126880.1  2 HFRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDAAARKFRGA 52
                    69*******.**********83...36*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.052259IPR001471AP2/ERF domain
SMARTSM003808.5E-38265IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-32259IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22260IPR016177DNA-binding domain
CDDcd000182.85E-19259No hitNo description
PfamPF008471.8E-13251IPR001471AP2/ERF domain
PRINTSPR003673.4E-11314IPR001471AP2/ERF domain
PRINTSPR003673.4E-112541IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
VHFRGVRKRP WGRYAAEIRD PAKKSRVWLG TFDTAEEAAR AYDAAARKFR GAKAKTNFPF  60
PPTVNDLNLS PSRSSTVESS SRDPTDFDLN QAAAGSRLPF PFQQHQFGGG IFPQQANQFR  120
FLDHPIFRNG TESGVIHDRH RVKAVVQCGG VQSDSDSSSV INLNQNDDHK SRPALDLDLN  180
FPPPDSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-22260261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-22260564ATERF1
3gcc_A7e-22260564ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6819320.0LN681932.1 Cucumis melo genomic scaffold, anchoredscaffold00001.
GenBankLN7132660.0LN713266.1 Cucumis melo genomic chromosome, chr_12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004146656.11e-135PREDICTED: ethylene-responsive transcription factor 11
TrEMBLA0A0A0LXG41e-134A0A0A0LXG4_CUCSA; Uncharacterized protein
STRINGXP_004169403.11e-135(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2481233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.16e-21erf domain protein 9
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]