PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.127470.1
Common NameCsa_6G502700, LOC101220447
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 215aa    MW: 24171.3 Da    PI: 7.735
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.127470.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.61.1e-20122156135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC tt+TplWR+gp+g+k+LCnaCG++y+k+++
  Cucsa.127470.1 122 CANCDTTTTPLWRNGPSGPKSLCNACGIRYKKEER 156
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011414.246116152IPR000679Zinc finger, GATA-type
SMARTSM004012.1E-18116167IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.09E-14119157No hitNo description
Gene3DG3DSA:3.30.50.101.3E-17120156IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.46E-14122153No hitNo description
PfamPF003202.5E-18122156IPR000679Zinc finger, GATA-type
PROSITE patternPS003440122147IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MMQRCGSYQC YSAGECSCNG FYGQQGTYFS MPSYNNYYET EHYSFESSSP VDCTLSLGTP  60
STRMTEYDEK RREEQHSASN FTWDLPRTKH PHSSKTTRRS SANIGSDKSN ANNGDQMFAR  120
HCANCDTTTT PLWRNGPSGP KSLCNACGIR YKKEERKAAS SGQQASSWLQ HHSHSQKAPR  180
FSHGIANELN PSVAFLTWSL NDTEQPQLYY DFTS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818750.0LN681875.1 Cucumis melo genomic scaffold, anchoredscaffold00007.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143515.11e-161PREDICTED: GATA transcription factor 18-like
TrEMBLA0A0A0KKD21e-160A0A0A0KKD2_CUCSA; Uncharacterized protein
STRINGXP_004160149.11e-161(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41053459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.13e-39GATA family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]