PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.129330.1
Common NameCsa_5G167110, LOC101221542
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 137aa    MW: 15790.3 Da    PI: 9.7684
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.129330.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2561e-1761111255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdps   k  r++lg+f++  +Aa+a++ a+ k++g
  Cucsa.129330.1  61 RYRGVRRRP-WGKFAAEIRDPSR--KGSRVWLGTFDSDVDAARAYDSAAFKIRG 111
                     7********.**********854..34**********99*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.52661119IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-3261120IPR001471AP2/ERF domain
PfamPF008471.1E-1261111IPR001471AP2/ERF domain
SMARTSM003805.2E-3661125IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-2261120IPR016177DNA-binding domain
PRINTSPR003671.6E-136273IPR001471AP2/ERF domain
CDDcd000181.53E-2469119No hitNo description
PRINTSPR003671.6E-13101121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
MELPLEEDND DEFSPLNLIR YHLLQDSSHS FSTLPDFGFK LQFQDFDYTH PQQQSPDDGR  60
RYRGVRRRPW GKFAAEIRDP SRKGSRVWLG TFDSDVDAAR AYDSAAFKIR GRKAKLNFPL  120
DAGKADPPPG NGRKKRX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-2659120364ATERF1
3gcc_A2e-2659120364ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB1259751e-107AB125975.1 Cucumis melo CMe-ERF1 mRNA for ERF-like protein, complete cds.
GenBankLN6818951e-107LN681895.1 Cucumis melo genomic scaffold, anchoredscaffold00005.
GenBankLN7132631e-107LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004143678.12e-82PREDICTED: ethylene-responsive transcription factor ERF106
SwissprotQ9LY056e-40EF106_ARATH; Ethylene-responsive transcription factor ERF106
TrEMBLA0A0A0KN336e-81A0A0A0KN33_CUCSA; ERF-like protein
STRINGXP_004158121.17e-82(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.14e-35ERF family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Kim H,Go YS,Suh MC
    DEWAX2 Transcription Factor Negatively Regulates Cuticular Wax Biosynthesis in Arabidopsis Leaves.
    Plant Cell Physiol., 2018. 59(5): p. 966-977
    [PMID:29425344]