PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.132830.1

Common Name

Csa_2G009480, LOC101222794

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 422aa MW: 44220.4 Da PI: 6.5692

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.132830.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.1	5.7e-12	228	273	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Cucsa.132830.1 228 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 273 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	2.72E-13	221	277	No hit	No description
SuperFamily	SSF47459	1.23E-16	221	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	223	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.0E-16	225	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-9	228	273	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	229	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MRLTNSLPDL HTHRRNPPQE TDASQLHHHH HQLQTSLFHP STFSSDDFLD QILSTVPSPW 60 ELPPGLPSQP LPPSNPDNVE FHVGDTTPAA KMAMSLLQQQ LLMSRGIVPA SAGDDCGLLP 120 MPGNNVVEVD GSSSSSFKCP NPTDHGSVVP SLFNEFAGFL NSTGPGSQNQ NQSQGNSNSQ 180 IPNFGGPVSA STPPPAGPSS CGGAAAAAAP GQPRQRVRAR RGQATDPHSI AERLRRERIA 240 ERMKALQELV PNANKTDKAS MLDEIIDYVK FLQLQVKVLS VSRLGGATAA MPSRLPDLST 300 EGGTECNQSN GTNGASGQTS TGAPSSNDAM TVTEHQVVKL MEEDMGSAMQ YLQGKGLCLM 360 PISLATAIST ATCHSRPITA SKGGGDPPTS PSLSALTVQS TALGNGTVDK PVRDTLSVSR 420 P*

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MRLTNSLPDL HTHRRNPPQE TDASQLHHHH HQLQTSLFHP STFSSDDFLD QILSTVPSPW  60
ELPPGLPSQP LPPSNPDNVE FHVGDTTPAA KMAMSLLQQQ LLMSRGIVPA SAGDDCGLLP  120
MPGNNVVEVD GSSSSSFKCP NPTDHGSVVP SLFNEFAGFL NSTGPGSQNQ NQSQGNSNSQ  180
IPNFGGPVSA STPPPAGPSS CGGAAAAAAP GQPRQRVRAR RGQATDPHSI AERLRRERIA  240
ERMKALQELV PNANKTDKAS MLDEIIDYVK FLQLQVKVLS VSRLGGATAA MPSRLPDLST  300
EGGTECNQSN GTNGASGQTS TGAPSSNDAM TVTEHQVVKL MEEDMGSAMQ YLQGKGLCLM  360
PISLATAIST ATCHSRPITA SKGGGDPPTS PSLSALTVQS TALGNGTVDK PVRDTLSVSR  420
P*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	232	237	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN688727	1e-177	LN688727.1 Cucumis melo genomic scaffold, unassembled_sequence36141.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004139396.1	0.0	PREDICTED: transcription factor bHLH66-like
TrEMBL	A0A0A0LFE4	0.0	A0A0A0LFE4_CUCSA; Uncharacterized protein
STRING	XP_004139396.1	0.0	(Cucumis sativus)
STRING	XP_004168602.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4778	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	2e-64	LJRHL1-like 1

Link Out ? help Back to Top
Phytozome	Cucsa.132830.1
Entrez Gene	101222794

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]