PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.133290.1

Common Name

Csa_2G011450, LOC101222793

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 435aa MW: 47084 Da PI: 6.9569

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.133290.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50.2	5.5e-16	233	291	3	61
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 ++kr rr+ +NRe+ArrsR+RK+a + eLe+ v++L eN++L k+l +++++ + Cucsa.133290.1 233 DVKRVRRMLSNRESARRSRRRKQAHLTELETQVAQLRLENSTLLKRLADISQKYNEANV 291 68*********************************************999999887665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.5E-19	231	295	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.576	233	288	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.2E-13	234	287	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.2E-12	235	287	No hit	No description
SuperFamily	SSF57959	2.73E-11	235	285	No hit	No description
CDD	cd14702	3.20E-6	236	287	No hit	No description
PROSITE pattern	PS00036	0	238	253	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	8.1E-37	302	428	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 435 aa Download sequence Send to blast
MDRMFSVGEI SDQYWSSELA VATPSSRPPP PSDQASKMNR SASEWAFQRF LQEASETSPH 60 SSAADHGEGE VIEIKDSSFD QLQKLNTNHD SLSNCNNTSI SSNAVPPNIP IDSEEYQAFL 120 KSKLHLACAA VAMKRGSFRM TPASSTSADC GSQASNTSGI QAPKASNVGA GNNSSRSPDK 180 DINGAAGVTS SSVVPKISEV RARPVTSGSS RDLSDDEEIE GETEINESKD PADVKRVRRM 240 LSNRESARRS RRRKQAHLTE LETQVAQLRL ENSTLLKRLA DISQKYNEAN VDNRVLKANI 300 ETLRAKVKMA EETVKRVTGN PMFHAMSEIS SIGISSLDGS QSDTSTDAAV PLHDDPCRHL 360 YQSTPNNPVG PHDIVVNNRL PNISQVSNGH QNSPSHVPPT MSGNKTGRSE SLQRVASLEH 420 LQKRICGAKT NAEQ*

Sequence ? help Back to Top

Protein Sequence Length: 435 aa Download sequence Send to blast

MDRMFSVGEI SDQYWSSELA VATPSSRPPP PSDQASKMNR SASEWAFQRF LQEASETSPH  60
SSAADHGEGE VIEIKDSSFD QLQKLNTNHD SLSNCNNTSI SSNAVPPNIP IDSEEYQAFL  120
KSKLHLACAA VAMKRGSFRM TPASSTSADC GSQASNTSGI QAPKASNVGA GNNSSRSPDK  180
DINGAAGVTS SSVVPKISEV RARPVTSGSS RDLSDDEEIE GETEINESKD PADVKRVRRM  240
LSNRESARRS RRRKQAHLTE LETQVAQLRL ENSTLLKRLA DISQKYNEAN VDNRVLKANI  300
ETLRAKVKMA EETVKRVTGN PMFHAMSEIS SIGISSLDGS QSDTSTDAAV PLHDDPCRHL  360
YQSTPNNPVG PHDIVVNNRL PNISQVSNGH QNSPSHVPPT MSGNKTGRSE SLQRVASLEH  420
LQKRICGAKT NAEQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	247	254	RRSRRRKQ
2	249	254	SRRRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681847	0.0	LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBank	LN713259	0.0	LN713259.1 Cucumis melo genomic chromosome, chr_5.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004139233.1	0.0	PREDICTED: light-inducible protein CPRF2-like
Swissprot	Q99090	1e-105	CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBL	A0A0A0LJC1	0.0	A0A0A0LJC1_CUCSA; Uncharacterized protein
STRING	XP_004156462.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4176	33	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	1e-70	bZIP family protein

Link Out ? help Back to Top
Phytozome	Cucsa.133290.1
Entrez Gene	101222793

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]