PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.133460.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GeBP
Protein Properties Length: 354aa    MW: 40226.6 Da    PI: 4.9322
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.133460.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57390.32.3e-28119215597
          DUF573   5 rlwseeDeivlLqGlidfkaktgksps....ddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 
                      +w++eDei lL+G+++++ k+  s++    +d  afy+++k +i++   k+ql++K+rrLK+K+++  +k++ gk+p+f+++h+q +f++s+ki
  Cucsa.133460.1 119 TIWTNEDEIKLLRGFLEYALKNRISSHrlqqQDAVAFYRKIKPKIQLCCDKNQLIDKLRRLKRKYQNTLRKINCGKKPAFKSQHEQLTFDISRKI 213
                     69****************999998554222269************************************************************** PP

          DUF573  96 Wg 97 
                     Wg
  Cucsa.133460.1 214 WG 215
                     *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045046.1E-26119215IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MTWPLSGWIF SSSSSSSMEE EEEEDEDQNT QLTDSDEHET HLNNDDDDEY QGDSYQEDAQ  60
NNEQNAAVSD ETDAADLHQS KTNSFCPIED HIPTAIAIPA NATTNNIVTV AIPARRRTTI  120
WTNEDEIKLL RGFLEYALKN RISSHRLQQQ DAVAFYRKIK PKIQLCCDKN QLIDKLRRLK  180
RKYQNTLRKI NCGKKPAFKS QHEQLTFDIS RKIWGRNSGR KQTSAKDSIL DEVLADINPN  240
FTETKVKTEN LGDEYEERDD IQLTKRRRTA FLSGEASNSN EIPMRPSSVL DDIGKFSGLV  300
EEVAKGCLTP FFKELISNGW PPVGLARRIP GHCNITLISL YFGSYFFAFS TES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818470.0LN681847.1 Cucumis melo genomic scaffold, anchoredscaffold00003.
GenBankLN7132590.0LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011648769.10.0PREDICTED: mediator-associated protein 1
TrEMBLA0A0A0LLF50.0A0A0A0LLF5_CUCSA; Uncharacterized protein
STRINGXP_004139376.10.0(Cucumis sativus)
STRINGXP_004156488.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2481633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.22e-29DNA-binding storekeeper protein-related transcriptional regulator