PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.142990.1
Common NameCsa_1G605670
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family RAV
Protein Properties Length: 283aa    MW: 32839.9 Da    PI: 8.6798
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.142990.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2331.5e-105299255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                    ++kGV    ++grW A+I+       + +r++lg+f t+++Aa a++ a  kl+ 
  Cucsa.142990.1 52 KFKGVV-PQQNGRWGAQIYA------NhQRIWLGTFKTEKDAAMAYDSASIKLRT 99
                    789996.6679******999......44**********99*********999985 PP
2B393.51.5e-29176267185
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                     f+k+ltpsdv+k++rlv+pkk+a +h        +++  +++++++d+s + W+++++y+++s+++v+t+GW++Fvk+++Lk++D+++F+  
  Cucsa.142990.1 176 FQKELTPSDVGKLNRLVIPKKYAVKHfpyisesAEENGDDIEIVFYDTSMKIWKFRYCYWRSSQSFVFTRGWNRFVKEKKLKANDIITFYTY 267
                     99****************************98855556899************************************************943 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.0E-1952113IPR001471AP2/ERF domain
PROSITE profilePS5103217.5752107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-1752107IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-1552108IPR016177DNA-binding domain
CDDcd000187.85E-2352109No hitNo description
PfamPF008472.0E-55299IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-34171270IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.76E-29174268IPR015300DNA-binding pseudobarrel domain
CDDcd100176.80E-27174265No hitNo description
PfamPF023621.8E-26176267IPR003340B3 DNA binding domain
SMARTSM010194.6E-21176275IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112176283IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEDEASSSLL SHIKNPILAE EVSDSNFTYY AIPEAKRPRL DNDLNDVMAV GKFKGVVPQQ  60
NGRWGAQIYA NHQRIWLGTF KTEKDAAMAY DSASIKLRTR DSHRNFPWTR RTIEEPNFQI  120
KFSTDAVLSM IKDGSYYSKF SAYLRTRSQI HDTNIQNPKK IDNGDGDSLF SCSHLFQKEL  180
TPSDVGKLNR LVIPKKYAVK HFPYISESAE ENGDDIEIVF YDTSMKIWKF RYCYWRSSQS  240
FVFTRGWNRF VKEKKLKAND IITFYTYESC GREENGGSLN FID
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A4e-3117526413100DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818060.0LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132560.0LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149034.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680-like
SwissprotQ9C6882e-99RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
SwissprotQ9C6P52e-99RAVL2_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A0A0LXD80.0A0A0A0LXD8_CUCSA; Uncharacterized protein
STRINGXP_004169754.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50003156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.11e-102RAV family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]