PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.147340.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family RAV
Protein Properties Length: 293aa    MW: 32860.9 Da    PI: 9.4256
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.147340.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.76.1e-134391155
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                    s++kGV   + +grW A+I++      ++r++lg+f  +++Aaka++ a+++++g
  Cucsa.147340.1 43 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEENDAAKAYDIAALRFRG 91
                    689***9788.8*********3.....5*************************98 PP
2B3993e-31168266194
                     EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     f+k+ tpsdv+k++rlv+pk++ae++     g ++ +++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+n L++gD+v F ++   ++
  Cucsa.147340.1 168 FEKTVTPSDVGKLNRLVIPKQHAEKNfpmeeGVVSGKGMLLNFEDMGGKVWRFRYSYWNSSQSYVLTKGWSRFVKDNTLRAGDVVRFLRSTGPDK 262
                     99*************************9999888889**************************************************97755666 PP

                     ..EE CS
              B3  91 elvv 94 
                     +l++
  Cucsa.147340.1 263 QLYI 266
                     5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.61E-2543101No hitNo description
SuperFamilySSF541711.44E-1643100IPR016177DNA-binding domain
PfamPF008472.2E-74391IPR001471AP2/ERF domain
PROSITE profilePS5103219.8884499IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.6E-204499IPR001471AP2/ERF domain
SMARTSM003809.1E-3044105IPR001471AP2/ERF domain
PRINTSPR003674.7E-64556IPR001471AP2/ERF domain
PRINTSPR003674.7E-681101IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.106.1E-39160266IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-32165265IPR015300DNA-binding pseudobarrel domain
CDDcd100172.16E-29167267No hitNo description
PROSITE profilePS5086314.113168270IPR003340B3 DNA binding domain
PfamPF023624.1E-28168266IPR003340B3 DNA binding domain
SMARTSM010191.4E-24168270IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDASSIDEST ASDSTSISPV TPLLFHSSPS ATAEAESRKL PSSRFKGVVP QPNGRWGAQI  60
YEKHQRVWLG TFNEENDAAK AYDIAALRFR GRDAVTNFKP SLNHDHDNAL EADFLNSHSK  120
LEIVDMLRKH TYNEELQQSK RQQRGAMAVD SGSFPHYPGS DSNREVLFEK TVTPSDVGKL  180
NRLVIPKQHA EKNFPMEEGV VSGKGMLLNF EDMGGKVWRF RYSYWNSSQS YVLTKGWSRF  240
VKDNTLRAGD VVRFLRSTGP DKQLYIHANP ISAPGINPVH VVKLFGVNIL QLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-5216526611112DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818920.0LN681892.1 Cucumis melo genomic scaffold, anchoredscaffold01595.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004151060.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-122RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A1S3CPL60.0A0A1S3CPL6_CUCME; AP2/ERF and B3 domain-containing transcription factor RAV1-like
STRINGXP_004151060.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-124related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]