PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.147580.1

Common Name

Csa_7G048070, LOC105436232

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bHLH

Protein Properties

Length: 205aa MW: 23070.9 Da PI: 8.2018

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.147580.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.3	1.6e-09	14	62	6	55
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++E++RR+++++ ++L++l+P+ + + l + A++YIk+L+ Cucsa.147580.1 14 RIIEKNRRNQMKNLCDQLKSLVPQqD--SKEVSLALPDQIDVAIKYIKDLE 62 68********************44..3444577779********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.611	8	61	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.14E-5	10	65	No hit	No description
SuperFamily	SSF47459	6.67E-11	10	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.6E-10	13	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.6E-6	14	62	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0050832	Biological Process	defense response to fungus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 205 aa Download sequence Send to blast
FSASSSTAAK IERRIIEKNR RNQMKNLCDQ LKSLVPQQDS KEVSLALPDQ IDVAIKYIKD 60 LEKRVNSAKE KKNRLQGKNK SAINMDSSSS SSSSSSSPQL KINQMGKSLE IILSSGNDNQ 120 YLLCETLRIL EEEGTEVVSA SFSVSGNSVF HTIHAQLGDS MVEFGMTKAT ERLTRLVYRS 180 NSDVELQKEE KQWWKEFPSE NWEF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681792	1e-109	LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBank	LN713255	1e-109	LN713255.1 Cucumis melo genomic chromosome, chr_1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011659708.1	1e-147	PREDICTED: transcription factor bHLH125-like
TrEMBL	A0A0A0K2C9	1e-146	A0A0A0K2C9_CUCSA; Uncharacterized protein
STRING	XP_004155520.1	1e-147	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF906	34	98

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	1e-20	bHLH family protein

Link Out ? help Back to Top
Phytozome	Cucsa.147580.1
Entrez Gene	105436232

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]