PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.148070.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB_related
Protein Properties Length: 94aa    MW: 11284.8 Da    PI: 8.7824
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.148070.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.11e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEde+l  +v+++G  +W+  +r+ g+ R++k+c++rw +yl
   Cucsa.148070.1 14 KGAWSAEEDEKLRAYVQEYGHCNWRELPRYAGLLRCGKSCRLRWINYL 61
                     79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-22864IPR009057Homeodomain-like
PROSITE profilePS5129422.583965IPR017930Myb domain
SMARTSM007174.1E-141363IPR001005SANT/Myb domain
PfamPF002492.0E-161461IPR001005SANT/Myb domain
SuperFamilySSF466891.61E-241589IPR009057Homeodomain-like
CDDcd001678.69E-111661No hitNo description
PROSITE profilePS500904.9836293IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.0E-106589IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 94 aa     Download sequence    Send to blast
MVRAPFYDEN GIKKGAWSAE EDEKLRAYVQ EYGHCNWREL PRYAGLLRCG KSCRLRWINY  60
LRPDVKRGNY SKEEEQLILQ LHQQYGNKYD FFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-15128925101MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817921e-70LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132551e-70LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004137010.11e-60PREDICTED: transcription repressor MYB6-like
SwissprotQ9SBF33e-39MYB92_ARATH; Transcription factor MYB92
TrEMBLA0A1S3C0B07e-58A0A1S3C0B0_CUCME; transcription factor WER-like isoform X2
TrEMBLA0A1S4E0E67e-59A0A1S4E0E6_CUCME; myb-related protein Myb4-like isoform X1
STRINGXP_004137010.15e-60(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56160.19e-35myb domain protein 72
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]