PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.148090.1
Common NameCsa_7G045590, LOC101219416
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 255aa    MW: 29446.6 Da    PI: 5.2078
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.148090.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.4e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++l+d+v+++G  +W++ +++ g+ R++k+c++rw +yl
   Cucsa.148090.1 15 KGVWTPEEDQKLIDYVNKYGHWNWRRLPKYAGLLRCGKSCRLRWMNYL 62
                     799*****************99**********99************97 PP
2Myb_DNA-binding48.61.8e-1568113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ eE+e +++  +q Gg+ W+t a  m+ gRt++++k++w+++l
   Cucsa.148090.1  68 RGGFSLEEEETIIQMYAQIGGR-WSTMAGVMP-GRTDNDIKNHWNTVL 113
                      7889******************.*********.************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.7881066IPR017930Myb domain
SuperFamilySSF466891.4E-2913109IPR009057Homeodomain-like
SMARTSM007175.1E-141464IPR001005SANT/Myb domain
PfamPF002491.2E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-231769IPR009057Homeodomain-like
CDDcd001672.18E-111862No hitNo description
SMARTSM007176.4E-1367115IPR001005SANT/Myb domain
PROSITE profilePS5129416.70767117IPR017930Myb domain
PfamPF002494.7E-1268113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-2370117IPR009057Homeodomain-like
CDDcd001671.03E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAKCCCCCDE TTVKKGVWTP EEDQKLIDYV NKYGHWNWRR LPKYAGLLRC GKSCRLRWMN  60
YLRPNIRRGG FSLEEEETII QMYAQIGGRW STMAGVMPGR TDNDIKNHWN TVLKRRVMKQ  120
QIENKKMLIK LANKQPLPPA TAAETNPIDH DVFSREIERS NNNSTLIMDP TAVEISEQIE  180
SIVESPTAGH YMDMELVDER LPESCTGDFW TDPLWMDNSF EMAFDNYQHQ GLGESINLLN  240
LGLDQYLLQE GIYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27151177108B-MYB
1h8a_C2e-271511727128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6817920.0LN681792.1 Cucumis melo genomic scaffold, anchoredscaffold00034.
GenBankLN7132550.0LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004144570.10.0PREDICTED: transcription factor WER-like
TrEMBLA0A0A0K1Q00.0A0A0A0K1Q0_CUCSA; Uncharacterized protein
STRINGXP_004144570.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.12e-54myb domain protein 74
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]