PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.149820.1

Common Name

Csa_3G637990, LOC101219098

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

G2-like

Protein Properties

Length: 262aa MW: 29539.6 Da PI: 6.1636

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.149820.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.3	7.4e-33	18	72	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG+ekAtPk++l+lm++kgLtl+h+kSHLQkYRl Cucsa.149820.1 18 KPRLRWTADLHDRFVDAVTKLGGPEKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 72 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.8E-32	15	75	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.609	15	75	IPR017930	Myb domain
SuperFamily	SSF46689	5.55E-16	18	75	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.9E-24	18	72	IPR006447	Myb domain, plants
Pfam	PF00249	7.5E-9	20	71	IPR001005	SANT/Myb domain
Pfam	PF14379	3.0E-19	105	152	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 262 aa Download sequence Send to blast
MERNYPYENG VMMTRDPKPR LRWTADLHDR FVDAVTKLGG PEKATPKSVL RLMGLKGLTL 60 YHLKSHLQKY RLGLQTRKQN VAEQRNESSG TLSNFSGVEE DDRGMQIAEA LKSHVEVQKT 120 ILEQLEVQNK LQMRIEAQGK YLQDILENAQ KSLALAINSN LGSLDQSTEM QLINFDAALS 180 DQIEKFKKQE IRGSITNLND VCKKTGDSLI QICKMEAAEE DTNEFNIEKN MINFDLNSKG 240 GYDYSANGAE ILEPKVLPCS R*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	7e-20	18	71	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	7e-20	18	71	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	7e-20	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	7e-20	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	7e-20	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	7e-20	18	71	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	7e-20	18	71	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	7e-20	18	71	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	7e-20	18	71	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	7e-20	18	71	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	7e-20	18	71	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	7e-20	18	71	2	55	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681829	0.0	LN681829.1 Cucumis melo genomic scaffold, anchoredscaffold00054.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004144408.1	0.0	PREDICTED: myb family transcription factor APL
Swissprot	C0SVS4	1e-69	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A0A0LCI1	0.0	A0A0A0LCI1_CUCSA; Uncharacterized protein
STRING	XP_004160999.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5101	31	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	3e-70	G2-like family protein

Link Out ? help Back to Top
Phytozome	Cucsa.149820.1
Entrez Gene	101219098

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]