PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.153540.1
Common NameCsa_4G286370, LOC101217036
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 153aa    MW: 17222.9 Da    PI: 10.1727
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.153540.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44e-18105140134
            GATA   1 Cs..nCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C+  nC+t  Tp+WR+gp g+k+LCnaCG++yrk+ 
  Cucsa.153540.1 105 CTnyNCNTNFTPMWRKGPLGPKSLCNACGIRYRKET 140
                     55559*****************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577164.32E-1297143No hitNo description
SMARTSM004012.0E-1199151IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.5E-13103144IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.0E-16105139IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.398109153IPR000679Zinc finger, GATA-type
CDDcd002026.55E-11109138No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MANNQGLTRN NEMMSEPNYN NPHQIQLHPS SYPNTHQAKP IPTSTPNNTP NLPLPKRGHN  60
NDLYTLLNPA SRVADDHEAE ASSAGRRKGS RRRRVSATND VERRCTNYNC NTNFTPMWRK  120
GPLGPKSLCN ACGIRYRKET MNKEAMAAEN SNX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818421e-127LN681842.1 Cucumis melo genomic scaffold, anchoredscaffold00022.
GenBankLN7132591e-127LN713259.1 Cucumis melo genomic chromosome, chr_5.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011654362.19e-96PREDICTED: GATA transcription factor 29
TrEMBLA0A0A0L0J02e-94A0A0A0L0J0_CUCSA; Uncharacterized protein
STRINGXP_004162027.11e-94(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF137781622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.18e-17GATA transcription factor 29
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]