PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.157080.1

Common Name

Csa_1G000770

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

NAC

Protein Properties

Length: 243aa MW: 27280.3 Da PI: 6.6125

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.157080.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.2	2.3e-34	5	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.....tksgyWkatgkd 89 lppGfrF+Pt+eelv eyLk kv ++ l++ ++i+e+ ++ +++Pwd+p ++ ++++e y Fsk++++++++++ + ksgyWka g++ Cucsa.157080.1 5 LPPGFRFEPTEEELVFEYLKCKVFSSALPA-SIIPEInGVWSLDPWDIP-AAGGGDEEKYLFSKEAEEHNNNNNGEGGgiigwSKSGYWKARGRE 97 79**************************.88999978******.5667899***999887655544435667788****** PP NAM 90 kevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 ke++s+ + +l+g+k+tL fy+++ +k +kt Wvmh+yrl Cucsa.157080.1 98 KEIVSNenGVALMGMKNTLDFYTNNIRKMKKTGWVMHQYRL 138 *8544456*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.93E-38	2	156	IPR003441	NAC domain
PROSITE profile	PS51005	39.78	5	158	IPR003441	NAC domain
Pfam	PF02365	3.6E-21	6	138	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MMRGLPPGFR FEPTEEELVF EYLKCKVFSS ALPASIIPEI NGVWSLDPWD IPAAGGGDEE 60 KYLFSKEAEE HNNNNNGEGG GIIGWSKSGY WKARGREKEI VSNENGVALM GMKNTLDFYT 120 NNIRKMKKTG WVMHQYRLII PHSHSSTNKW VLCHILSPTN KLFSHIVHPH RHRRRLHCSI 180 SSTKDVNGDH EDEHDEHVNH ITTSTAFSDD EHDSVSSTAS SSSTSATFTD FTSTATTTTF 240 HF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-25	5	155	17	162	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-25	5	155	17	162	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-25	5	155	17	162	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-25	5	155	17	162	NO APICAL MERISTEM PROTEIN
4dul_A	1e-25	5	155	17	162	NAC domain-containing protein 19
4dul_B	1e-25	5	155	17	162	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681814	0.0	LN681814.1 Cucumis melo genomic scaffold, anchoredscaffold00089.
GenBank	LN713256	0.0	LN713256.1 Cucumis melo genomic chromosome, chr_2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004138030.1	0.0	PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
TrEMBL	A0A0A0LR52	1e-179	A0A0A0LR52_CUCSA; Uncharacterized protein
STRING	XP_004161362.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF24798	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13180.1	6e-34	NAC domain containing protein 83

Link Out ? help Back to Top
Phytozome	Cucsa.157080.1

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]