PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.158080.1
Common NameCsa_5G637750, LOC101212956
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ERF
Protein Properties Length: 407aa    MW: 45737.5 Da    PI: 4.3352
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.158080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.5e-1959108255
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Cucsa.158080.1  59 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 108
                     789******.7*********33....35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.39E-3258115No hitNo description
SuperFamilySSF541713.6E-1959116IPR016177DNA-binding domain
PROSITE profilePS5103219.59959116IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-2759115IPR001471AP2/ERF domain
SMARTSM003801.4E-3559122IPR001471AP2/ERF domain
PfamPF008471.0E-1359108IPR001471AP2/ERF domain
PRINTSPR003675.9E-86071IPR001471AP2/ERF domain
PRINTSPR003675.9E-88298IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MPKRSFFSPS TNKEIRKAVE GVEDKSSSEG GALGWDEMVK EATATAAVLS GGARRARKRF  60
VGVRQRPSGR WVAEIKDTIQ KIRVWLGTFD TAEEAARAYD EAACLLRGSN TRTNFWPCSP  120
LSSSSPALPS KITNLLIQRL NARNNNSSIH NLPINQQEQK HQPVQERMLN SIDHQSREEL  180
ATTCFTDRVL SDLLNDQEVF TTNPNIEEIS RSFESCLTEK DESDSGEMES SNWVGMTQMN  240
DSNGGDEKNE LVQEEEEEEE EGSNVLDFHF LDDIGPPCYY SPFEIAEEIG EPMEGGEGNE  300
DEPSSMLREA MKRMKYERKI SASLYAFNGI PECLKLKLGE GSGVRSNSEL ITSLRKACDR  360
RRSNEEKVEE EEEDEEDKEE MKSFSSNEVD LSIWSSLDLP PICFVN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818890.0LN681889.1 Cucumis melo genomic scaffold, anchoredscaffold00051.
GenBankLN7132630.0LN713263.1 Cucumis melo genomic chromosome, chr_9.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011656001.10.0PREDICTED: dehydration-responsive element-binding protein 2F-like
TrEMBLA0A0A0KSB50.0A0A0A0KSB5_CUCSA; Uncharacterized protein
STRINGXP_008459348.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-22related to AP2 11
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]