PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.159630.1
Common NameCsa_2G365080, LOC101209573
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family DBB
Protein Properties Length: 307aa    MW: 32638 Da    PI: 7.0639
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.159630.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.71.8e-06443538
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     C+ +e+  +  fC+ ++  lC+ C    H+       H+
  Cucsa.159630.1  4 QCDVCEKGDAVVFCTADEAALCNLCDHRVHHAnklaskHR 43
                    7******88*******************964446777776 PP
2zf-B_box25.13.7e-085495237
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......H 37
                    e+++C+ ++e +  lfC++++  lC++C + +H+       H
  Cucsa.159630.1 54 EAPVCDVCKERRGFLFCQQDRAILCRECDDPIHSAneltkkH 95
                    5789*******9*********************655555555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.267147IPR000315B-box-type zinc finger
CDDcd000213.84E-6347No hitNo description
SMARTSM003362.4E-6447IPR000315B-box-type zinc finger
SMARTSM003367.7E-1553100IPR000315B-box-type zinc finger
PROSITE profilePS501199.76953100IPR000315B-box-type zinc finger
PfamPF006433.8E-65496IPR000315B-box-type zinc finger
CDDcd000216.42E-956100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009641Biological Processshade avoidance
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MKIQCDVCEK GDAVVFCTAD EAALCNLCDH RVHHANKLAS KHRRFSLLRP DAGEAPVCDV  60
CKERRGFLFC QQDRAILCRE CDDPIHSANE LTKKHDRFLL TGIKLSASAA LYAPSPSGEK  120
PIGSGGCVVS ASKSKGSVKK VAAVSKAPTI CTPNVCVNAP TNITPAAVVN KGGGGQIATG  180
GGGSASSISE YLMETLPGWH FEDFLDSSVS PPFVEFDDGI GFPFVEGDLN GCFSSSERIE  240
LWVPQGPPPA PYNSGLMMNN GLKDTKDLGV NSSKVNRSVW TDDGFTVPQI TSTAPSPGFK  300
RSRPFW*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152665.10.0PREDICTED: B-box zinc finger protein 20-like
TrEMBLA0A0A0LL530.0A0A0A0LL53_CUCSA; Uncharacterized protein
STRINGXP_004165560.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.15e-61salt tolerance homolog2
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]