PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.160530.1
Common NameCsa_2G370430
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 294aa    MW: 31733.4 Da    PI: 7.052
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.160530.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.21.8e-16203239135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nCg ++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  Cucsa.160530.1 203 CTNCGISSmsTPMMRRGPSGPRSLCNACGLFWANRGT 239
                     ******9999***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.24568103IPR010399Tify domain
SMARTSM009791.6E-1168103IPR010399Tify domain
PfamPF062001.2E-1171102IPR010399Tify domain
PROSITE profilePS5101712.491135177IPR010402CCT domain
PfamPF062031.7E-15135177IPR010402CCT domain
SuperFamilySSF577161.09E-11196246No hitNo description
PROSITE profilePS5011410.712197256IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-15197250IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.1E-16201243IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.50E-14202249No hitNo description
PfamPF003204.0E-14203239IPR000679Zinc finger, GATA-type
PROSITE patternPS003440203230IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MYARAQPLTM GDQIADCSDT GEPLDNRLVR YGAHSLEDGV GVGGMVEVLN PDAVYVPAGD  60
GSDLAVQRSD GSNQLTLSFR GQVYLFDAVS PEKVQAVLLL LGGCELSSGQ QSVDLVNPNQ  120
RNALDLPGRS SQPQRAASLN RFRQKRKERC FEKKVRYGVR QEVALRMQRN KGQFTSSKKL  180
DGSYSHGNVS ELGQDESPSE TSCTNCGISS MSTPMMRRGP SGPRSLCNAC GLFWANRGTL  240
RDLPKRSQDH PVTPAEQCES DGGKDLDCRH GNHAPSNLVS FSNGDTAALM AEH*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-131LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-131LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004152604.10.0PREDICTED: GATA transcription factor 25
SwissprotQ9LRH62e-85GAT25_ARATH; GATA transcription factor 25
TrEMBLA0A0A0LNY50.0A0A0A0LNY5_CUCSA; Uncharacterized protein
STRINGXP_004163952.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.31e-79GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]