PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.160650.1
Common NameCsa_2G370560, LOC101205864
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 213aa    MW: 23655.9 Da    PI: 9.2382
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.160650.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.24.1e-152773354
                    HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    r+h+e+ErrRR+riNs +++Lr+llP+      +K +Ka+ L ++v ++k+L
  Cucsa.160650.1 27 RSHKEAERRRRQRINSHLSTLRTLLPNT-----TKTDKASLLAEVVSHVKEL 73
                    78*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.922473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.61E-122775No hitNo description
Gene3DG3DSA:4.10.280.108.3E-142776IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-122773IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.07E-152784IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-133079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MSTAGCSIVD NAADASKDVK KSSEASRSHK EAERRRRQRI NSHLSTLRTL LPNTTKTDKA  60
SLLAEVVSHV KELRRRATEV ARRSTEQSGG GGMVSWPFPS EEDEATLCYC DNENKVMRAT  120
VCCDERSSLN RDMMQAIRSV EVRVVRAETM TLGGRTKNVV VMEWSGGGRQ RDEEFMGLRR  180
ALKAVVENRA QSVLGNKRAR ACCPIEDTFL MC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011649695.11e-154PREDICTED: transcription factor bHLH30-like
TrEMBLA0A0A0LPM71e-153A0A0A0LPM7_CUCSA; Uncharacterized protein
STRINGXP_004172447.11e-153(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114412834
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.16e-34basic helix-loop-helix 32
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]