PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.161160.1
Common NameCsa_2G373450
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family GATA
Protein Properties Length: 375aa    MW: 40473.6 Da    PI: 5.125
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.161160.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.95.6e-18264298135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Cucsa.161160.1 264 CMHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 298
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.637258294IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-17258308IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.8E-15258295IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.57E-15260322No hitNo description
CDDcd002029.08E-15263310No hitNo description
PROSITE patternPS003440264289IPR000679Zinc finger, GATA-type
PfamPF003207.8E-16264298IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MEAPEYFQIN AYSSQFSSPD DADATTTAAA AAAPDHFIVE ELLDFSNNED DAVLTDSGGG  60
GGGGGGGGGG GLFYNNNNTS TNDHNNNNNS TESSAVTVME SCNSSSSFFE DISGSNLGDA  120
HFSSELCVPY DDLAELEWLS NFVEESFSSE DMQKLELISG VKVKSDEPPT QSPQPTATRS  180
AAAIFKPEIV SVPAKARSKR SRALPSNWNN SALLPLSSPT AESETTPPIE QPHPIKKTLP  240
KAAATAKKKD SPDLGFSSGE GRKCMHCATD KTPQWRTGPM GPKTLCNACG VRYKSGRLVP  300
EYRPAASPTF VLTKHSNSHR KVLELRRQKE ILRAQQQQPQ HLLLDHRQDM IFDASNGDDY  360
LIHQHVGPDF RQLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00530DAPTransfer from AT5G25830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011650196.10.0PREDICTED: GATA transcription factor 12-like
SwissprotP697816e-89GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A0A0LPR50.0A0A0A0LPR5_CUCSA; GATA transcription factor
STRINGXP_008445001.10.0(Cucumis melo)
STRINGXP_004162986.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.18e-88GATA transcription factor 12
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]
  4. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]