PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.161540.1

Common Name

Csa_2G376830, LOC101210908

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

bZIP

Protein Properties

Length: 326aa MW: 35658.6 Da PI: 5.7978

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.161540.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	51.7	1.8e-16	160	213	3	56
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 +lkr rr+++NR +ArrsR+RK+a ++eLe+ vk+L++eN++L ++l ++++ Cucsa.161540.1 160 ALKRMRRMISNRDSARRSRRRKQAHLAELENQVKQLKGENETLFNQLLDASQQY 213 59*****************************************97776666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.9E-14	158	222	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.898	160	223	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	3.3E-14	160	206	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.04E-11	162	211	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.4E-12	162	213	No hit	No description
PROSITE pattern	PS00036	0	165	180	IPR004827	Basic-leucine zipper domain
CDD	cd14702	1.04E-7	180	214	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071333	Biological Process	cellular response to glucose stimulus
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MKRSSSELAL EEFLRKAAVI SNDDATDPED DVFKIDDQQI IIRSPKRGKN FQDSPDATYF 60 FGDIDFSYFL VKNNREIMDA IVNCGGGLAE APLRSQNLTP KRSSFSPTLD SQSSIVGSPT 120 SASNLMGGEH QRGNNSGSSE DQSDDEIEAG SCDQSTDALA LKRMRRMISN RDSARRSRRR 180 KQAHLAELEN QVKQLKGENE TLFNQLLDAS QQYRDANTNN RVLKSDVDAL RAKVKLAEDT 240 LARGSMTCSL NQLLQSHLST PQPLTALRRM PTSPLGFSGD EVSYSGVTMS GQNPTAAGIP 300 NSEMHMKTGM GSEAVSCISG IWPRN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	174	181	RRSRRRKQ
2	176	181	SRRRKQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681823	1e-131	LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBank	LN713257	1e-131	LN713257.1 Cucumis melo genomic chromosome, chr_3.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011649748.1	0.0	PREDICTED: basic leucine zipper 9
TrEMBL	A0A0A0LLM9	0.0	A0A0A0LLM9_CUCSA; Uncharacterized protein
STRING	XP_004160778.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4195	34	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G24800.1	2e-52	basic leucine zipper 9

Link Out ? help Back to Top
Phytozome	Cucsa.161540.1
Entrez Gene	101210908

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]