PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.163680.1
Common NameCsa_1G572390, LOC101212047
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 488aa    MW: 54834.7 Da    PI: 6.8248
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.163680.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.33.2e-49141422128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     p+GfrFhPtdeel ++yLk+k+ g++  + + i++vdi+++ePw+Lp+  + ++++++w+fFs +d ky++g+r+nratk+gyWk+tgkd+++++
  Cucsa.163680.1  14 PVGFRFHPTDEELFNHYLKNKIVGRESLV-QYIRQVDICNFEPWELPSlsNDQTGDHQWFFFSAQDFKYSNGRRSNRATKTGYWKSTGKDRQIMA 107
                     89************************777.88***************4335556888************************************** PP

             NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                     + ++ l+g+kktLvfy+gr p+g kt+Wv+hey+l
  Cucsa.163680.1 108 RvTKVLIGTKKTLVFYSGRVPNGIKTNWVIHEYHL 142
                     978888****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-549161IPR003441NAC domain
PROSITE profilePS5100552.49113162IPR003441NAC domain
PfamPF023653.8E-2614142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MANCLLLPPH NLFPVGFRFH PTDEELFNHY LKNKIVGRES LVQYIRQVDI CNFEPWELPS  60
LSNDQTGDHQ WFFFSAQDFK YSNGRRSNRA TKTGYWKSTG KDRQIMARVT KVLIGTKKTL  120
VFYSGRVPNG IKTNWVIHEY HLHPDPNLAQ LKSFVICVLK RKFEQSDVLM FEEAEPNGLL  180
TSTNVATGNQ NQETPGSGHS LFQSDLQVSD YGVSELDPLL FSDPEPTSMD FQVINSYGTL  240
INGHTDEDVN SVLVDDENCF HEGTPNSSTS NFNLEEMLDL IDEDQGGGFS GNTGIDTALS  300
WKYDHASPSF FGESVCSRIQ TKSIPMIKES RRSPLTSKIL KFDHSDDSDR GTGNFSSQHQ  360
PKSHKVLDHV DTLQNVQSKR ETQLQVVPRL SKAEAVPKQI KIVRPAATSN EDIFVYHQSK  420
VENRRLKSIG HGSLKSGGKC SSSILTTKCI HHKLSPASYF ARACLGFILL IIVARELLLS  480
MEIDNQF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-381314215140Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818061e-155LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025.
GenBankLN7132561e-155LN713256.1 Cucumis melo genomic chromosome, chr_2.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011659914.10.0PREDICTED: NAC transcription factor 25-like
TrEMBLA0A0A0LWI70.0A0A0A0LWI7_CUCSA; Uncharacterized protein
STRINGXP_008450706.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-51NAC transcription factor-like 9
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]