PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.164290.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family HSF
Protein Properties Length: 180aa    MW: 21184.1 Da    PI: 10.1393
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.164290.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind121.93.4e-3891002102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+++ed++++++isw+++g++fvv+++ efak+vLpk Fkhsnf+SFvRQLn+YgF+kv++++         weF +++F+kg+ke+l++
  Cucsa.164290.1   9 FLMKTYRMVEDPATDDVISWNSDGTAFVVWQTAEFAKDVLPKLFKHSNFSSFVRQLNTYGFRKVRTTR---------WEFCNEKFQKGEKEKLCE 94 
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k+
  Cucsa.164290.1  95 IRRRKK 100
                     ****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.2E-53598IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.5E-39598IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.45E-33598IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004478.0E-34998IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-19932IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-194759IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404872IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-196072IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MRKSTPAPFL MKTYRMVEDP ATDDVISWNS DGTAFVVWQT AEFAKDVLPK LFKHSNFSSF  60
VRQLNTYGFR KVRTTRWEFC NEKFQKGEKE KLCEIRRRKK WRNKRQHEVD EDQRSTSSNS  120
SSSQYITLMD ENKRLKKENG ALSSELASMK NKCKGLFDLV ATYENISKKE DEDVRPKLFG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B4e-249984104Putative transcription factor
5d5x_B4e-249984104Putative transcription factor
5d5x_E4e-249984104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818801e-142LN681880.1 Cucumis melo genomic scaffold, anchoredscaffold00058.
GenBankLN7132621e-142LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004149402.11e-132PREDICTED: heat stress transcription factor B-3
SwissprotO222304e-61HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A1S3CD461e-108A0A1S3CD46_CUCME; heat stress transcription factor B-3
STRINGXP_004168395.11e-132(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.19e-60heat shock transcription factor B3