PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.165460.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family C2H2
Protein Properties Length: 256aa    MW: 28559.5 Da    PI: 10.2625
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.165460.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.60.0017117139123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C+ C++ Fs+   L  H  +H
  Cucsa.165460.1 117 FECKTCNRQFSSFQALGGHRASH 139
                     89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.08E-9115189No hitNo description
PfamPF139122.0E-12116141IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.346117144IPR007087Zinc finger, C2H2
SMARTSM003550.2117139IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280119139IPR007087Zinc finger, C2H2
PfamPF139121.3E-9166191IPR007087Zinc finger, C2H2
SMARTSM003550.5167189IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.912167189IPR007087Zinc finger, C2H2
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MEKWKKKNKK KLELGYSLST KRACELSHAF KSLFLHSIET KNAISVSNFL HTNRERERER  60
EGNYIFQYSL LPIIMKRERE LESITTMANC LMLLSRNTAP DHHFESSTSS SSPNRVFECK  120
TCNRQFSSFQ ALGGHRASHK KPRIVGGDGG NSDGSSSQGS PTKPKTHECS ICGLEFAIGQ  180
ALGGHMRRHR ATTLLNDARL LTNHPRSPPP QQPPVVKKSN GGGRILCLDL NLTPSENDSR  240
FLQLGKSISM VDCFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818970.0LN681897.1 Cucumis melo genomic scaffold, anchoredscaffold00063.
GenBankLN7132640.0LN713264.1 Cucumis melo genomic chromosome, chr_10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147699.11e-132PREDICTED: zinc finger protein ZAT12-like
TrEMBLA0A0A0KLU21e-130A0A0A0KLU2_CUCSA; Uncharacterized protein
STRINGXP_004147699.11e-131(Cucumis sativus)
STRINGXP_004173932.11e-131(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.13e-36C2H2 family protein