PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.167500.1

Common Name

Csa_1G547510, LOC101220733

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

WRKY

Protein Properties

Length: 381aa MW: 41506.2 Da PI: 6.1049

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.167500.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	96.5	1.8e-30	197	255	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+++p++++itY++eHnh+ Cucsa.167500.1 197 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTNPNMLVITYTSEHNHP 255 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-30	188	257	IPR003657	WRKY domain
PROSITE profile	PS50811	32.535	191	257	IPR003657	WRKY domain
SuperFamily	SSF118290	4.45E-26	194	257	IPR003657	WRKY domain
SMART	SM00774	6.0E-37	196	256	IPR003657	WRKY domain
Pfam	PF03106	1.6E-25	198	255	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence Send to blast
MDNNNYQQAG DLTDVIRLSS APVAGHFSSE FSLDPFSGDR QLWSHLPADN SSMNFGDPLS 60 FPTRDPFLLP HFSPFNFASD GGGEGLAADD QPSNLLSHML QISPSSGDGV ISTPPCESLA 120 TAVGNSPRST SVRGGGGLVL PTGGSNSLCL MENSGIQISS PRNSANKRRK SQVKKVVCIP 180 APAPANSRSS SGEVVPSDLW AWRKYGQKPI KGSPYPRGYY RCSSSKGCSA RKQVERSRTN 240 PNMLVITYTS EHNHPWPTQR NALAGSTRSH PSRTTTATTA NKTSPKHERI NDILPTTTIK 300 EEEMDEDQMT DKATTTNDNQ EEGDHQDFPY DLIFTEFADQ MNDLEHDNNH DHNHHLSADP 360 LNNNMLMFSN HGFSAGNGEG X

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence Send to blast

MDNNNYQQAG DLTDVIRLSS APVAGHFSSE FSLDPFSGDR QLWSHLPADN SSMNFGDPLS  60
FPTRDPFLLP HFSPFNFASD GGGEGLAADD QPSNLLSHML QISPSSGDGV ISTPPCESLA  120
TAVGNSPRST SVRGGGGLVL PTGGSNSLCL MENSGIQISS PRNSANKRRK SQVKKVVCIP  180
APAPANSRSS SGEVVPSDLW AWRKYGQKPI KGSPYPRGYY RCSSSKGCSA RKQVERSRTN  240
PNMLVITYTS EHNHPWPTQR NALAGSTRSH PSRTTTATTA NKTSPKHERI NDILPTTTIK  300
EEEMDEDQMT DKATTTNDNQ EEGDHQDFPY DLIFTEFADQ MNDLEHDNNH DHNHHLSADP  360
LNNNMLMFSN HGFSAGNGEG X

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-25	170	258	2	80	Disease resistance protein RRS1
5w3x_D	2e-25	170	258	2	80	Disease resistance protein RRS1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00171	DAP	Transfer from AT1G30650	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681892	0.0	LN681892.1 Cucumis melo genomic scaffold, anchoredscaffold01595.
GenBank	LN713263	0.0	LN713263.1 Cucumis melo genomic chromosome, chr_9.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011659293.1	0.0	PREDICTED: probable WRKY transcription factor 14
TrEMBL	A0A0A0LYP6	0.0	A0A0A0LYP6_CUCSA; Uncharacterized protein
STRING	XP_004158081.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5430	34	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34830.1	1e-62	WRKY DNA-binding protein 35

Link Out ? help Back to Top
Phytozome	Cucsa.167500.1
Entrez Gene	101220733

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402]