PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.174460.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family LBD
Protein Properties Length: 69aa    MW: 7414.9 Da    PI: 9.0947
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.174460.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26044.83.7e-142264446
          DUF260  4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkll 46
                    aCk+  r+C+++C lapyfp  +p kf+++h +FGasn++kll
  Cucsa.174460.1 22 ACKIRCRRCVEKCGLAPYFPPFEPLKFNVAHSFFGASNIIKLL 64
                    9****************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089112.7241868IPR004883Lateral organ boundaries, LOB
PfamPF031957.8E-132264IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
IIASPSPSPT VQASMVVSSY VACKIRCRRC VEKCGLAPYF PPFEPLKFNV AHSFFGASNI  60
IKLLLICP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463550.11e-19PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9SK089e-16LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A1S3CK122e-18A0A1S3CK12_CUCME; LOB domain-containing protein 1-like
STRINGXP_008463550.14e-19(Cucumis melo)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.14e-18LOB domain-containing protein 11