PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cucsa.175390.1

Common Name

Csa_3G734310, LOC101207082

Organism

Cucumis sativus

Taxonomic ID

3659

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis

Family

Dof

Protein Properties

Length: 345aa MW: 36502.5 Da PI: 9.8407

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cucsa.175390.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.2e-39	79	138	3	62
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+ Cucsa.175390.1 79 EAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 138 7789*****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101447	3.92E-5	39	49	No hit	No description
ProDom	PD007478	3.0E-31	62	127	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-32	81	136	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.544	82	136	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	84	120	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MNFSSIPPYL DPSNWQQQVT HQVGTSSSTA LSSQLLPPPP PPPPPPPPPL PPHGVGGAGS 60 IRPGSMAERA RMANIPMPEA ALKCPRCEST NTKFCYFNNY SLTQPRHFCK TCRRYWTRGG 120 ALRNVPVGGG CRRNKRSKGS SSKSPPVSSD RQQTSGSANS SSSAIASNNS GGLSPQIPPL 180 GRFMAPLHQQ FSDFDIGSYS YGGGLSAPAS ATGDLSFQLG NTNLGGGTSI GSLLGFDHQQ 240 WRLQQQPPQF PFLSSLDPFE GGNGGGGEAP GTAWQMRPKA PSTSSRNNLT QMGNSVKMEE 300 TPDQVNNNVG RQSIGINEQY WSSGSMAWSD LSGFSSSSST RNPL*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MNFSSIPPYL DPSNWQQQVT HQVGTSSSTA LSSQLLPPPP PPPPPPPPPL PPHGVGGAGS  60
IRPGSMAERA RMANIPMPEA ALKCPRCEST NTKFCYFNNY SLTQPRHFCK TCRRYWTRGG  120
ALRNVPVGGG CRRNKRSKGS SSKSPPVSSD RQQTSGSANS SSSAIASNNS GGLSPQIPPL  180
GRFMAPLHQQ FSDFDIGSYS YGGGLSAPAS ATGDLSFQLG NTNLGGGTSI GSLLGFDHQQ  240
WRLQQQPPQF PFLSSLDPFE GGNGGGGEAP GTAWQMRPKA PSTSSRNNLT QMGNSVKMEE  300
TPDQVNNNVG RQSIGINEQY WSSGSMAWSD LSGFSSSSST RNPL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Probably involved in early processes for vascular development (PubMed:17583520). The PEAR proteins (e.g. DOF2.4, DOF5.1, DOF3.2, DOF1.1, DOF5.6 and DOF5.3) activate gene expression that promotes radial growth of protophloem sieve elements. Triggers the transcription of HD-ZIP III genes, especially in the central domain of vascular tissue (PubMed:30626969). {ECO:0000250\|UniProtKB:Q9M2U1, ECO:0000269\|PubMed:17583520, ECO:0000269\|PubMed:30626969}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00295	DAP	Transfer from AT2G37590	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cytokinin in procambium. Antagonized by the HD-ZIP III proteins and by mobile miR165 and miR166 microRNAs. {ECO:0000269\|PubMed:30626969}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LN681841	0.0	LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBank	LN713258	0.0	LN713258.1 Cucumis melo genomic chromosome, chr_4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004137942.1	0.0	PREDICTED: dof zinc finger protein DOF5.1-like
Swissprot	O80928	5e-52	DOF24_ARATH; Dof zinc finger protein DOF2.4
TrEMBL	A0A0A0LAK9	0.0	A0A0A0LAK9_CUCSA; Uncharacterized protein
STRING	XP_004137942.1	0.0	(Cucumis sativus)
STRING	XP_004173251.1	0.0	(Cucumis sativus)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF656	34	143

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37590.1	1e-42	DNA binding with one finger 2.4

Link Out ? help Back to Top
Phytozome	Cucsa.175390.1
Entrez Gene	101207082

Publications ? help Back to Top
Ren Y, et al. An integrated genetic and cytogenetic map of the cucumber genome. PLoS ONE, 2009. 4(6): p. e5795 [PMID:19495411] Guo S, et al. Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics, 2010. 11: p. 384 [PMID:20565788] Li Z, et al. RNA-Seq improves annotation of protein-coding genes in the cucumber genome. BMC Genomics, 2011. 12: p. 540 [PMID:22047402] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Miyashima S, et al. Mobile PEAR transcription factors integrate positional cues to prime cambial growth. Nature, 2019. 565(7740): p. 490-494 [PMID:30626969]