PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.175670.1
Organism
Cucumis sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family NAC
Protein Properties Length: 218aa    MW: 25119 Da    PI: 8.3374
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.175670.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM67.73.2e-2171322128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     p+G+ F Pt+eel+ +yL +kv g + +   v++ +d+y+ eP+++  ++   +++++yfF++ +kk+++  rk  a + g+W+   k ++v+s+
  Cucsa.175670.1   7 PVGYVFCPTEEELLGYYLYNKVLGGQAPP-LVLPVIDLYTQEPSQIWqQCRGVDNQDIYFFTTLQKKKSRIIRKVGA-NGGTWSGENKPQQVFSS 99 
                     89************************887.68**************724444577799********99876666664.78**************9 PP

             NAM  96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++ l g+ k + + k + +  e ++W+m ey+l
  Cucsa.175670.1 100 iiDNLLLGTMKRFRYEKSQVK--EDCTWIMYEYTL 132
                     988889********9854444..59********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-275154IPR003441NAC domain
PROSITE profilePS5100528.4736154IPR003441NAC domain
PfamPF023654.2E-167132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MDPSLIPVGY VFCPTEEELL GYYLYNKVLG GQAPPLVLPV IDLYTQEPSQ IWQQCRGVDN  60
QDIYFFTTLQ KKKSRIIRKV GANGGTWSGE NKPQQVFSSI IDNLLLGTMK RFRYEKSQVK  120
EDCTWIMYEY TLNPSILPEG LVHDSYVLCM IRKKIVKTEK MVMASNKRRA SNNNWPMTSM  180
HVDNQNHKRM KLQEEAVVDS QKDCCIDATT IGWYVQF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011660358.11e-142PREDICTED: uncharacterized protein LOC105436381
TrEMBLA0A1S3B8F11e-98A0A1S3B8F1_CUCME; NAC domain-containing protein 105-like
STRINGXP_004146370.11e-152(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55724133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.27e-17NAC domain containing protein 61